Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0307400-01 | |
| Os09t0508500-02 | |
| Os11t0109900-01 | |
| Os12t0109900-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Os05t0307400-01 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Os11t0109900-01 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Os12t0109900-02 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Os09t0508500-02 | AT5G41070.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 10.14 | 100.0 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 70.07 | 70.62 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 70.0 | 70.45 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 67.45 | 70.39 |
| OQU91441 | Sorghum | nucleus | 66.74 | 67.89 |
| HORVU5Hr1G019300.8 | Barley | plastid | 69.72 | 66.64 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 66.38 | 63.89 |
| Zm00001d013797_P006 | Maize | nucleus | 29.72 | 57.01 |
| KXG38096 | Sorghum | plastid | 31.13 | 56.43 |
| KRH11802 | Soybean | cytosol | 10.0 | 49.47 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 46.95 | 47.46 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 44.18 | 46.08 |
| Solyc06g048960.2.1 | Tomato | vacuole | 45.39 | 45.75 |
| Bra031999.1-P | Field mustard | nucleus | 40.78 | 45.03 |
| PGSC0003DMT400042918 | Potato | nucleus | 35.25 | 45.02 |
| Solyc11g008520.1.1 | Tomato | nucleus | 44.89 | 44.33 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 43.62 | 44.31 |
| CDY50692 | Canola | nucleus | 43.55 | 44.2 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 44.04 | 43.92 |
| AT3G03300.1 | Thale cress | nucleus | 43.19 | 43.88 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 40.5 | 43.36 |
| KRH36816 | Soybean | cytosol | 43.69 | 43.35 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 19.29 | 34.52 |
| Os06t0358800-01 | Rice | cytosol | 5.89 | 27.76 |
| Os04t0509300-02 | Rice | cytosol | 31.13 | 26.49 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 5.89 | 26.18 |
| Os01t0909200-01 | Rice | cytosol | 30.07 | 25.68 |
| Os01t0551100-01 | Rice | cytosol | 4.61 | 25.39 |
| Os10t0485600-01 | Rice | cytosol, plastid | 29.36 | 25.29 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 29.65 | 22.2 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:4333337 |
| ProteinID:AAS07188.1 | ProteinID:AAS07189.1 | ProteinID:AAS07190.1 | ProteinID:ABF97330.1 | EMBL:AK072334 | ProteinID:BAF12478.1 |
| ProteinID:BAS85077.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0004518 | GO:GO:0004519 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0030422 |
| GO:GO:0031047 | GO:GO:0040029 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090501 | GO:GO:0090502 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 |
| InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | EnsemblPlantsGene:Os03g0583900 | EnsemblPlants:Os03t0583900-01 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 |
| PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | UniProt:Q10HL3 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI00003E1FD4 |
| RefSeq:XP_015630302.1 | InterPro:dsRBD_dom | SEG:seg | : | : | : |
Description
DICER-LIKE 2ADEAD-like helicase, N-terminal domain containing protein. (Os03t0583900-01);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-02);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-03);Similar to Endoribonuclease Dicer homolog 2a. (Os03t0583900-04)
Coordinates
chr3:-:21500980..21515569
Molecular Weight (calculated)
158503.0 Da
IEP (calculated)
6.855
GRAVY (calculated)
-0.183
Length
1410 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGGPLTAAGG RGDGGAKAVE PLRPPPPPDP KTMARWYQLE ALERAVRGNT LAFLETGSGK TLIAVMLLRA YAHRVRRPDS RRFAVFLVPT VVLVGQQARV
0101: VEQHTDLVVK QFCGEMGVDF WDAATWRSQL EDGEVLVMTP QILLDNLRHS FFRLQDIALL IFDECHHARG NTPYACIFKE FYHPQLNSSA SDPLPRIFGM
0201: SASLIYSKDL NPHNYSKQIS EIENLMNSKV YTVDSESALS EYIPFASTKI VDFDDSNISS ELHANILSCL NRLNKKHIEA LDRKLHGSSL ENAKQRISKL
0301: HHTFVYCLYN LGVWLAAKAA EVQSYEENSL SFWGETLDKN VEGFIRNYSE EVHRELSCFL KNGHIGEKFP ADSQDGILTP KVHCLIRTLL QYRHMQDLRC
0401: IVFVERVITS IVLEHLLSSI HQMSGWNVKH MAGSRPGLLS QSRKNHTEIV ESFRKGKVHI IIATQILEEG LDVPSCNLVI RFDPSATVCS FIQSRGRARM
0501: ENSDYLLLVG RGDVEAQTNA EKFLASGQIM REESLRLGSI SCQPLENTLC EDTYYRVEST RAIVTLNSSV PLIHFFCSKL PSDEYFNPLP RFDIDKASGT
0601: CTLHLPKSSP VQTVNVEGEG SILKETVCLK ACQELHAIGA LTDSLLPELD VPCDEEPDIV VENKIEQPSY FPEEFVDNWR SFSRLGIYYC YKISLEGCPK
0701: TASPTDILLA LKCDLGSDFT SSSFKLPGGQ DNASVTMKYV GIIHLNQEQV IIARRFQTTI LSFLIGDDHL EVSNGIKYFH EMQVPIGVVY LLLPLVSGRI
0801: DWCSMKFSSS PIYEANNKHM THCHSCKDID LLQTKDGPFC RCILKNSIVC TPHNNIFYVI SGFLDLDANS CLPQHDGTVV TYKDYFKTRH GLTLTFENQP
0901: LLAGSKHVKV RNFLHNCYSK KEKEPGDRYS VELPPELCRI IMSPVSANNL HIFSYVPSIM FRIQCMLLSV KLKVQLGPTV QQFDVPVLKI LEALTTKKCQ
1001: EEFSQESLET LGDSFLKYVT TRHLFSEYRL QHEGILTKMK KNLISNAALC QLACSSNLVG YIHAEEFNPR DWIIPCLDYD ERDNKKISFL APNGMYSQRK
1101: MSIKSKRIAD SVEALIGAYL STAGEKAAFL LMKSLGMNIE FHTEIPVERK ISMKAEEFIN VRSLEGMLGY KFNDSLLLLE ALTHGSYQTS GPTSCYQRLE
1201: FLGDAILDHL FTEYYYSKYP DCTPELLTDL RSASVNNNCY AHAAVKSGLN KHILHSSSEL HRKMSYYLEE FGQSFTGPSY GWEAGIGLPK VLGDVIESIA
1301: GAIYLDSKCD KEVVWRSMKR LLEPLATPET IEPDPVKGLQ EFCDRRSFKI TYEKNHVDGV SSVIARVKAG ETTYSATKSG PCKLVAKKLA SKAVLKDLIA
1401: GHKDTEAAAV
0101: VEQHTDLVVK QFCGEMGVDF WDAATWRSQL EDGEVLVMTP QILLDNLRHS FFRLQDIALL IFDECHHARG NTPYACIFKE FYHPQLNSSA SDPLPRIFGM
0201: SASLIYSKDL NPHNYSKQIS EIENLMNSKV YTVDSESALS EYIPFASTKI VDFDDSNISS ELHANILSCL NRLNKKHIEA LDRKLHGSSL ENAKQRISKL
0301: HHTFVYCLYN LGVWLAAKAA EVQSYEENSL SFWGETLDKN VEGFIRNYSE EVHRELSCFL KNGHIGEKFP ADSQDGILTP KVHCLIRTLL QYRHMQDLRC
0401: IVFVERVITS IVLEHLLSSI HQMSGWNVKH MAGSRPGLLS QSRKNHTEIV ESFRKGKVHI IIATQILEEG LDVPSCNLVI RFDPSATVCS FIQSRGRARM
0501: ENSDYLLLVG RGDVEAQTNA EKFLASGQIM REESLRLGSI SCQPLENTLC EDTYYRVEST RAIVTLNSSV PLIHFFCSKL PSDEYFNPLP RFDIDKASGT
0601: CTLHLPKSSP VQTVNVEGEG SILKETVCLK ACQELHAIGA LTDSLLPELD VPCDEEPDIV VENKIEQPSY FPEEFVDNWR SFSRLGIYYC YKISLEGCPK
0701: TASPTDILLA LKCDLGSDFT SSSFKLPGGQ DNASVTMKYV GIIHLNQEQV IIARRFQTTI LSFLIGDDHL EVSNGIKYFH EMQVPIGVVY LLLPLVSGRI
0801: DWCSMKFSSS PIYEANNKHM THCHSCKDID LLQTKDGPFC RCILKNSIVC TPHNNIFYVI SGFLDLDANS CLPQHDGTVV TYKDYFKTRH GLTLTFENQP
0901: LLAGSKHVKV RNFLHNCYSK KEKEPGDRYS VELPPELCRI IMSPVSANNL HIFSYVPSIM FRIQCMLLSV KLKVQLGPTV QQFDVPVLKI LEALTTKKCQ
1001: EEFSQESLET LGDSFLKYVT TRHLFSEYRL QHEGILTKMK KNLISNAALC QLACSSNLVG YIHAEEFNPR DWIIPCLDYD ERDNKKISFL APNGMYSQRK
1101: MSIKSKRIAD SVEALIGAYL STAGEKAAFL LMKSLGMNIE FHTEIPVERK ISMKAEEFIN VRSLEGMLGY KFNDSLLLLE ALTHGSYQTS GPTSCYQRLE
1201: FLGDAILDHL FTEYYYSKYP DCTPELLTDL RSASVNNNCY AHAAVKSGLN KHILHSSSEL HRKMSYYLEE FGQSFTGPSY GWEAGIGLPK VLGDVIESIA
1301: GAIYLDSKCD KEVVWRSMKR LLEPLATPET IEPDPVKGLQ EFCDRRSFKI TYEKNHVDGV SSVIARVKAG ETTYSATKSG PCKLVAKKLA SKAVLKDLIA
1401: GHKDTEAAAV
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.