Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005065_P002 | |
| Zm00001d006103_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Zm00001d005065_P002 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | Zm00001d006103_P001 | AT5G41070.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91441 | Sorghum | nucleus | 79.39 | 83.91 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 64.57 | 67.62 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 61.84 | 67.06 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 64.03 | 66.95 |
| Os03t0583900-01 | Rice | nucleus | 63.89 | 66.38 |
| HORVU5Hr1G019300.8 | Barley | plastid | 64.3 | 63.86 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 5.94 | 60.84 |
| Zm00001d013797_P006 | Maize | nucleus | 28.67 | 57.14 |
| KRH11802 | Soybean | cytosol | 9.08 | 46.67 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 44.1 | 46.31 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 41.09 | 44.53 |
| PGSC0003DMT400042918 | Potato | nucleus | 33.38 | 44.29 |
| Solyc06g048960.2.1 | Tomato | vacuole | 42.12 | 44.1 |
| AT3G03300.1 | Thale cress | nucleus | 41.43 | 43.73 |
| Bra031999.1-P | Field mustard | nucleus | 37.82 | 43.38 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 41.71 | 43.21 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 40.82 | 43.08 |
| Solyc11g008520.1.1 | Tomato | nucleus | 41.64 | 42.72 |
| KRH36816 | Soybean | cytosol | 41.37 | 42.65 |
| CDY50692 | Canola | nucleus | 40.41 | 42.62 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 37.95 | 42.22 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 19.66 | 36.55 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 29.83 | 27.16 |
| Zm00001d032655_P006 | Maize | nucleus | 28.46 | 26.56 |
| Zm00001d042432_P007 | Maize | cytosol | 29.42 | 25.84 |
| Zm00001d032362_P002 | Maize | mitochondrion | 5.73 | 25.53 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 30.72 | 23.3 |
| Zm00001d009879_P002 | Maize | plastid | 5.73 | 22.34 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100192986 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| MapMan:35.1 | UniProt:A0A1D6GM50 | ProteinID:AQK64387.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0031047 |
| GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000844BA1D |
| EnsemblPlantsGene:Zm00001d013796 | EnsemblPlants:Zm00001d013796_P005 | EnsemblPlants:Zm00001d013796_T005 | InterPro:dsRBD_dom | SEG:seg | : |
Description
dicer-like 105
Coordinates
chr5:-:20375070..20392119
Molecular Weight (calculated)
165702.0 Da
IEP (calculated)
7.199
GRAVY (calculated)
-0.074
Length
1465 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTRAAAEAAG EVVVEEDLPP SCDPQTQARW YQLEALERAL AGNTLVFLET GAGKTLIAVL LLRRFAHRIR SSPPPSFAVF LVPTVVLVNQ QAGVIKEHTD
0101: LRVAQFYGDM GVDFWNADTW RGRIDGAEVL VMTPQILLDN LRHSIFRLRD IPLLIFDECH RATGNSPYAC ILKLQVLRLR QPVAHLYQFR RSYDCMCTGE
0201: FYHPQLNSRP SDSIPTIFGM TASLIARNLA LDKYSEEISE FENLMNAKVY TVASESALLQ YIPIATTKIV EYDDYIVTSE LYSHTIRCLN KLETKHLEIL
0301: KGKLHGSPLE NSEKRIKKLN AMFLYCISDL GVWLAAKAAE ILQSNKESCV SFWGEELDEK LEGFVRNYVR DVYSDLSEII LKMTKRGVQR NCILVSCFFN
0401: CIKYDLLIFL SYFIFISVYT GHIGEDFAED LQDGLLTSKV YFLIKSLMGY RHMQDLRCIV FVERVITSIV LEALLSTINQ MSGWSVRYMA SGRNCGLQHQ
0501: SRNKHVEIVD SFRSGKVHLI IATQILEEGL DVPSCNLIIR FDQAATVRSF IQSRGRARMQ HSDYVLLVRR HVFQFCRGDV NALSKTQKFL KSGQIMREES
0601: QRLESTCCQP LLNTLCNEEF YGVESTGAIV TLNSSIQLIN FFCSKLPSDE YFKPLPRFKI DKALGTCTLH LPMSSPVQTI YAEGKVSIIK KVVCLKACRE
0701: LHAVGALTDY LLPESSVPCE DEPDIVVDKY KNGQPDYFPE QLVDNWSSFS RRGFYYCYMV SLEGCSKTTP AEIVLAVKCD MGSDFISNSF KLWGVQDYLS
0801: FTMRYVGIIH LNQEQVIAAR RFQTTILSLL ISNDLSEVSN YIKNLLEMPA SPGAVYLLLP VVSGKIDWRS IKFSASEMPE ATNMDMRHCY PCKDTGIVQT
0901: KDGTFCSCML RNSIVCTPHN GMFYAVCGFL DLNANSLLHR SDGSFLSYKT YFKERYNLDL RCEDQALLEA RKLVEVRNFL HKCNYKKEKE RSGKSVVELP
1001: PELCIVVMSP MSAITLRSFT FIPSIMYRIQ CMLLSMNLKM QLGPSMQQFD IPALKILEAL TTKNCQEEFS QESLETLGDS FLKYITTQHF FVKYKHQHEG
1101: MLTKMKKNVI SNAALCQLAC SNNLVGYIRS EAFNPKTWIV PGVGYDICDR SLRKLKSKRI ADSVEALIGA YLSTAGEQAA YIFLKSLGMD IEFHKMPIER
1201: VITIKAEEFI NVKSLELLLD YSFNDPSLLM EALTHGSYQI AGTTPCYQRL EFLGDAVLDH IFTDYFYHQY PECTPELLTD LRSASVNNSC YAHAAVKAGL
1301: HKHVLHSSSA LHKRMADYLD KFEQSFSGPS HGWEAGISLP KVLGDVVESI AGAIYIDAKH DKGVVWRSMK RILEPLVTPD TLQNDPVKEL QEFCDSKGYT
1401: LEYTVTRDNG VSSVVAEVRT EGTTYKATRT GFSKLDAKKL AASSVLRDLK AADTKQYSAN GISCT
0101: LRVAQFYGDM GVDFWNADTW RGRIDGAEVL VMTPQILLDN LRHSIFRLRD IPLLIFDECH RATGNSPYAC ILKLQVLRLR QPVAHLYQFR RSYDCMCTGE
0201: FYHPQLNSRP SDSIPTIFGM TASLIARNLA LDKYSEEISE FENLMNAKVY TVASESALLQ YIPIATTKIV EYDDYIVTSE LYSHTIRCLN KLETKHLEIL
0301: KGKLHGSPLE NSEKRIKKLN AMFLYCISDL GVWLAAKAAE ILQSNKESCV SFWGEELDEK LEGFVRNYVR DVYSDLSEII LKMTKRGVQR NCILVSCFFN
0401: CIKYDLLIFL SYFIFISVYT GHIGEDFAED LQDGLLTSKV YFLIKSLMGY RHMQDLRCIV FVERVITSIV LEALLSTINQ MSGWSVRYMA SGRNCGLQHQ
0501: SRNKHVEIVD SFRSGKVHLI IATQILEEGL DVPSCNLIIR FDQAATVRSF IQSRGRARMQ HSDYVLLVRR HVFQFCRGDV NALSKTQKFL KSGQIMREES
0601: QRLESTCCQP LLNTLCNEEF YGVESTGAIV TLNSSIQLIN FFCSKLPSDE YFKPLPRFKI DKALGTCTLH LPMSSPVQTI YAEGKVSIIK KVVCLKACRE
0701: LHAVGALTDY LLPESSVPCE DEPDIVVDKY KNGQPDYFPE QLVDNWSSFS RRGFYYCYMV SLEGCSKTTP AEIVLAVKCD MGSDFISNSF KLWGVQDYLS
0801: FTMRYVGIIH LNQEQVIAAR RFQTTILSLL ISNDLSEVSN YIKNLLEMPA SPGAVYLLLP VVSGKIDWRS IKFSASEMPE ATNMDMRHCY PCKDTGIVQT
0901: KDGTFCSCML RNSIVCTPHN GMFYAVCGFL DLNANSLLHR SDGSFLSYKT YFKERYNLDL RCEDQALLEA RKLVEVRNFL HKCNYKKEKE RSGKSVVELP
1001: PELCIVVMSP MSAITLRSFT FIPSIMYRIQ CMLLSMNLKM QLGPSMQQFD IPALKILEAL TTKNCQEEFS QESLETLGDS FLKYITTQHF FVKYKHQHEG
1101: MLTKMKKNVI SNAALCQLAC SNNLVGYIRS EAFNPKTWIV PGVGYDICDR SLRKLKSKRI ADSVEALIGA YLSTAGEQAA YIFLKSLGMD IEFHKMPIER
1201: VITIKAEEFI NVKSLELLLD YSFNDPSLLM EALTHGSYQI AGTTPCYQRL EFLGDAVLDH IFTDYFYHQY PECTPELLTD LRSASVNNSC YAHAAVKAGL
1301: HKHVLHSSSA LHKRMADYLD KFEQSFSGPS HGWEAGISLP KVLGDVVESI AGAIYIDAKH DKGVVWRSMK RILEPLVTPD TLQNDPVKEL QEFCDSKGYT
1401: LEYTVTRDNG VSSVVAEVRT EGTTYKATRT GFSKLDAKKL AASSVLRDLK AADTKQYSAN GISCT
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.