Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | KRH52961 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | KRH62246 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11802 | Soybean | cytosol | 17.66 | 88.07 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 82.2 | 82.6 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 58.62 | 59.71 |
| Bra031999.1-P | Field mustard | nucleus | 49.47 | 55.05 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 51.79 | 54.44 |
| AT3G03300.1 | Thale cress | nucleus | 53.06 | 54.32 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 52.99 | 54.25 |
| CDY50692 | Canola | nucleus | 52.71 | 53.92 |
| Solyc06g048960.2.1 | Tomato | vacuole | 52.99 | 53.82 |
| PGSC0003DMT400042918 | Potato | nucleus | 41.8 | 53.8 |
| Solyc11g008520.1.1 | Tomato | nucleus | 53.06 | 52.8 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 48.77 | 52.62 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 25.26 | 45.56 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 43.07 | 43.75 |
| Os03t0583900-01 | Rice | nucleus | 43.35 | 43.69 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.52 | 43.67 |
| OQU91441 | Sorghum | nucleus | 42.51 | 43.58 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 42.86 | 43.47 |
| HORVU5Hr1G019300.8 | Barley | plastid | 43.35 | 41.76 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 42.65 | 41.37 |
| Zm00001d013797_P006 | Maize | nucleus | 19.21 | 37.14 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 3.66 | 36.36 |
| KXG38096 | Sorghum | plastid | 19.28 | 35.22 |
| KRH03544 | Soybean | nucleus | 32.09 | 27.87 |
| KRH20103 | Soybean | nucleus | 31.95 | 27.73 |
| KRH61605 | Soybean | nucleus | 29.84 | 25.33 |
| KRH52276 | Soybean | cytosol | 8.44 | 23.86 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 31.81 | 23.24 |
| KRH14361 | Soybean | cytosol | 5.63 | 23.19 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 31.67 | 23.11 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100792448 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| MapMan:35.1 | EMBL:ACUP02005397 | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | EnsemblPlantsGene:GLYMA_09G025300 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0030422 |
| GO:GO:0031047 | GO:GO:0040029 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 |
| InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | UniProt:K7LBG6 | EnsemblPlants:KRH36816 | ProteinID:KRH36816 |
| ProteinID:KRH36816.1 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 |
| PFAM:PF02170 | PFAM:PF03368 | PFAM:PF04851 | ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 |
| SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0002337EA1 | InterPro:dsRBD_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:2038665..2051685
Molecular Weight (calculated)
161020.0 Da
IEP (calculated)
7.017
GRAVY (calculated)
-0.195
Length
1421 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSSLSLSVY GGKKRKRESA QRSNSLVDQK GKETMEEAPS MEMDTDSQED QNIAPDVLPF ARSYQLEALY KAIHENTIVY LETGSGKTLI AIMLLRSYAH
0101: QLRKPSPYIA VFLVPQVVLV SQQAEAVKRH TDLKVGMYWG DMGVDFWDAA TWKQEMEKHE VLVMTPAILL SCLRHSFFKL NMINVLIMDE CHHARGKHPY
0201: ACIMTEFYHH QLKSGISDLP RIFGMTASPI KSKVGKSESS WSENIQKLMI LMHSKVYTCV SEAVITEFIP TSTPKFKFYS NNGIQFVLFE ELASKLKMLK
0301: EQHELTLRSS DFTKSIAESA QKRITKIFCS LMFCLDELGV WLALKAAESL SSNEIESFSW GHSGDRVVKD FILEGVHALK SYLQCDPQWS IGDNIKSDVK
0401: MGLLTSKVCC LVDSLLEYRG LTDMRCIIFV ERIITAIVLE DLLNTLLPKY NSWKTKFIAG YNFGLQNQSR TKQNEIVNEF RMGLVNIIVA TSILEEGLDV
0501: QRCNLVIRFD PCPTVCSFIQ SRGRARMRNS DYILMVKSGD SVTCSRLEKY LASADIMRKE SLRHSSLPCD PFEGDEFDKE AYHVSSTGAI ANLSSSISLI
0601: YLYCSRLPAD GYFKPAPRWD KETGTLYLPK SCPLQPICVE GNKKHLKNIA CLEACKQLHK IGALTDNLVP DIVIEEAEVE EFGNEPYDEN QPTFVPFGLV
0701: NSVSNNSHTI YHCYLMELSQ NFSYDISVQD IFLAIRIELD PEIGCTQFDM GFDRGSVSLK LRYKGTINLS PNLVLLCKKF QVTLLGSIID HSMNKLATSL
0801: DKCYLEDNVE IDYLLLPAIG KGEKSHVNWL AIKSVEPSSF TCKYHQPHIE TKSGLVCTCK LQDALVCTSH PGGKIYFYIT TGIMELHGNS PMELRGGEVT
0901: TYKKYYEQHH GIQLQFENQW LLKARHHFKV KNYCHGQKQG KDGEASKAFV ELPPELCSIV MSPIKDSIIY TFSFIPSIMH RLESLLGAFN LKKMHLDHCT
1001: QNEIQTIKVL EAITTKRCNE AFHYESLETL GDSFLKYAAS QQLFKTYKNH HEGLLSVKRE KIISNAALCK LGCSSGLPGF IRNEPFDPHA WTIPGDKPES
1101: LKLEELVIKG KKIYVHGKRK LNRKIIADVV EALIGAFLST GGEISALLFM DWVGIKVSFD KIPYERHFDI QPEKLLNVRF LESQLKYSFH DHSLLVEALT
1201: HGSYMLPEVP RCYQRLEFLG DSVLDYLITW HLYNEYPGMS PGQLTDMRAA SVNNDCYAWS AIKHGLHKHV LHASQELHKH IAVTLNNFDK LSSSSTFGYE
1301: SEASPPKVLG DIIESLAGAI LVDSGFNKEV VWQSIRPLLE PLVTPETLKL HPIRELNELC QKRSYKIVLE DVSRKDGVTN YRMKVEADGV IHEYEYTGPA
1401: LRDTAKKIAC KEILNSLKED L
0101: QLRKPSPYIA VFLVPQVVLV SQQAEAVKRH TDLKVGMYWG DMGVDFWDAA TWKQEMEKHE VLVMTPAILL SCLRHSFFKL NMINVLIMDE CHHARGKHPY
0201: ACIMTEFYHH QLKSGISDLP RIFGMTASPI KSKVGKSESS WSENIQKLMI LMHSKVYTCV SEAVITEFIP TSTPKFKFYS NNGIQFVLFE ELASKLKMLK
0301: EQHELTLRSS DFTKSIAESA QKRITKIFCS LMFCLDELGV WLALKAAESL SSNEIESFSW GHSGDRVVKD FILEGVHALK SYLQCDPQWS IGDNIKSDVK
0401: MGLLTSKVCC LVDSLLEYRG LTDMRCIIFV ERIITAIVLE DLLNTLLPKY NSWKTKFIAG YNFGLQNQSR TKQNEIVNEF RMGLVNIIVA TSILEEGLDV
0501: QRCNLVIRFD PCPTVCSFIQ SRGRARMRNS DYILMVKSGD SVTCSRLEKY LASADIMRKE SLRHSSLPCD PFEGDEFDKE AYHVSSTGAI ANLSSSISLI
0601: YLYCSRLPAD GYFKPAPRWD KETGTLYLPK SCPLQPICVE GNKKHLKNIA CLEACKQLHK IGALTDNLVP DIVIEEAEVE EFGNEPYDEN QPTFVPFGLV
0701: NSVSNNSHTI YHCYLMELSQ NFSYDISVQD IFLAIRIELD PEIGCTQFDM GFDRGSVSLK LRYKGTINLS PNLVLLCKKF QVTLLGSIID HSMNKLATSL
0801: DKCYLEDNVE IDYLLLPAIG KGEKSHVNWL AIKSVEPSSF TCKYHQPHIE TKSGLVCTCK LQDALVCTSH PGGKIYFYIT TGIMELHGNS PMELRGGEVT
0901: TYKKYYEQHH GIQLQFENQW LLKARHHFKV KNYCHGQKQG KDGEASKAFV ELPPELCSIV MSPIKDSIIY TFSFIPSIMH RLESLLGAFN LKKMHLDHCT
1001: QNEIQTIKVL EAITTKRCNE AFHYESLETL GDSFLKYAAS QQLFKTYKNH HEGLLSVKRE KIISNAALCK LGCSSGLPGF IRNEPFDPHA WTIPGDKPES
1101: LKLEELVIKG KKIYVHGKRK LNRKIIADVV EALIGAFLST GGEISALLFM DWVGIKVSFD KIPYERHFDI QPEKLLNVRF LESQLKYSFH DHSLLVEALT
1201: HGSYMLPEVP RCYQRLEFLG DSVLDYLITW HLYNEYPGMS PGQLTDMRAA SVNNDCYAWS AIKHGLHKHV LHASQELHKH IAVTLNNFDK LSSSSTFGYE
1301: SEASPPKVLG DIIESLAGAI LVDSGFNKEV VWQSIRPLLE PLVTPETLKL HPIRELNELC QKRSYKIVLE DVSRKDGVTN YRMKVEADGV IHEYEYTGPA
1401: LRDTAKKIAC KEILNSLKED L
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.