Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 45.92 | 34.84 |
| KRH14361 | Soybean | cytosol | 19.88 | 28.99 |
| KRH61605 | Soybean | nucleus | 81.91 | 24.61 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 39.16 | 19.02 |
| Solyc08g067210.2.1 | Tomato | nucleus | 46.92 | 16.5 |
| CDY30942 | Canola | nucleus | 41.35 | 16.49 |
| KRH11802 | Soybean | cytosol | 8.95 | 15.79 |
| Bra019456.1-P | Field mustard | nucleus | 43.74 | 15.2 |
| CDY21223 | Canola | nucleus | 43.94 | 14.44 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 44.14 | 14.05 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 44.53 | 14.02 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 54.08 | 14.0 |
| Os01t0909200-01 | Rice | cytosol | 45.92 | 13.99 |
| KXG33962 | Sorghum | nucleus | 45.13 | 13.7 |
| TraesCS3D01G411200.6 | Wheat | nucleus | 43.54 | 13.4 |
| Zm00001d042432_P007 | Maize | cytosol | 44.33 | 13.37 |
| TraesCS3A01G415400.2 | Wheat | nucleus | 43.94 | 13.17 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 43.74 | 13.12 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 41.95 | 12.97 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 41.55 | 12.84 |
| Os10t0485600-01 | Rice | cytosol, plastid | 41.55 | 12.77 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 42.15 | 12.6 |
| OQU91611 | Sorghum | nucleus, plastid | 40.95 | 12.58 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 42.15 | 12.58 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 19.09 | 12.18 |
| Zm00001d032655_P006 | Maize | nucleus | 37.18 | 11.91 |
| KRH20103 | Soybean | nucleus | 29.62 | 9.1 |
| KRH03544 | Soybean | nucleus | 29.42 | 9.05 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 24.06 | 8.56 |
| KRH36816 | Soybean | cytosol | 23.86 | 8.44 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 30.82 | 7.96 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 30.62 | 7.92 |
| GSMUA_Achr10P... | Banana | cytosol | 0.6 | 0.71 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100814732 | Gene3D:3.30.160.20 | MapMan:35.1 | EMBL:ACUP02003415 | InterPro:Dicer_dimerisation_dom |
| EnsemblPlantsGene:GLYMA_06G058000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0030422 | GO:GO:0040029 | GO:GO:0090501 |
| GO:GO:0090502 | InterPro:IPR000999 | InterPro:IPR005034 | InterPro:IPR014720 | InterPro:IPR036389 | UniProt:K7KTB7 |
| EnsemblPlants:KRH52276 | ProteinID:KRH52276 | ProteinID:KRH52276.1 | PFAM:PF00636 | PFAM:PF03368 | PFscan:PS50137 |
| PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF37 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000295D4C8 | InterPro:dsRBD_dom | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:+:4360224..4364475
Molecular Weight (calculated)
55812.9 Da
IEP (calculated)
5.468
GRAVY (calculated)
-0.112
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFLTDFQVE EYYGAKGVDT WSLKMWEKVI SNNDTIADCV EALIGAYYVD GGLFASLNVM KWLGIGVELE LSSLDEAITA ASLSTCVPIE SDIASLEKKI
101: EYEFSVKGLL LEAITHLSEK ELGIGCCYER LKFLGDSVLD LLITWHLYQS HTDIDPGVLA DLRSASVNND NFAQVAVRHN LHQHLLHSSG LLVSQILEYV
201: KVISESDPRS LPSIRAPKAL GDVVESIVGP ILIGTKLSLD QVWNVFYPLL SPIVTPDKLE LPPFRELNEL CDSLGHFVKV KENCEKMGSA MHVEVSVQLP
301: NALLVREGKG PNKKTAKGEA AFHLLKDLEK RGILHGSLMS KGKRDNPDHI YDSFHLKRDS SICSSLIEEH SSEPASHKRH TLDETNLTAS IQFCETSELI
401: TPAVAFINQI IDNAMSVGGP RTTLYDVCKK LQWPVPAFDS REYKDSFYFV TDLYLNPVKG CKEARDKTVS LSKITLCIPN YGNIECKGEA RSDKKSSFDS
501: AAI
101: EYEFSVKGLL LEAITHLSEK ELGIGCCYER LKFLGDSVLD LLITWHLYQS HTDIDPGVLA DLRSASVNND NFAQVAVRHN LHQHLLHSSG LLVSQILEYV
201: KVISESDPRS LPSIRAPKAL GDVVESIVGP ILIGTKLSLD QVWNVFYPLL SPIVTPDKLE LPPFRELNEL CDSLGHFVKV KENCEKMGSA MHVEVSVQLP
301: NALLVREGKG PNKKTAKGEA AFHLLKDLEK RGILHGSLMS KGKRDNPDHI YDSFHLKRDS SICSSLIEEH SSEPASHKRH TLDETNLTAS IQFCETSELI
401: TPAVAFINQI IDNAMSVGGP RTTLYDVCKK LQWPVPAFDS REYKDSFYFV TDLYLNPVKG CKEARDKTVS LSKITLCIPN YGNIECKGEA RSDKKSSFDS
501: AAI
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.