Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G415400.2 | Wheat | nucleus | 97.49 | 94.93 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 97.37 | 94.87 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 90.88 | 88.13 |
| Os01t0909200-01 | Rice | cytosol | 70.07 | 69.35 |
| KXG33962 | Sorghum | nucleus | 68.3 | 67.35 |
| Zm00001d042432_P007 | Maize | cytosol | 67.32 | 65.95 |
| GSMUA_Achr10P... | Banana | nucleus | 21.6 | 53.24 |
| Solyc08g067210.2.1 | Tomato | nucleus | 39.72 | 45.38 |
| KRH61605 | Soybean | nucleus | 46.08 | 44.98 |
| GSMUA_Achr10P... | Banana | cytosol | 11.57 | 44.68 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 43.64 | 43.8 |
| KRH52276 | Soybean | cytosol | 13.4 | 43.54 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 39.53 | 40.89 |
| CDY30942 | Canola | nucleus | 31.46 | 40.76 |
| Bra019456.1-P | Field mustard | nucleus | 35.5 | 40.08 |
| CDY21223 | Canola | nucleus | 36.78 | 39.26 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 42.47 | 35.72 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 6.3 | 33.33 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 6.24 | 32.59 |
| TraesCS2D01G479300.1 | Wheat | plastid | 6.24 | 29.48 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 24.79 | 28.91 |
| TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 6.18 | 27.45 |
| TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 6.18 | 27.15 |
| TraesCS7D01G504300.3 | Wheat | mitochondrion | 6.12 | 27.03 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 26.5 | 26.65 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 30.36 | 24.51 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0016891 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 |
| InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | InterPro:P-loop_NTPase |
| InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom | InterPro:RNase_III_sf |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS3D01G411200 | EnsemblPlants:TraesCS3D01G411200.6 | TIGR:cd00046 | TIGR:cd00079 |
| TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:523807124..523816665
Molecular Weight (calculated)
182456.0 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.236
Length
1634 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEAESAPGR GGAGEDAMDA AGPAPAEAVP VPDVNMNPLK RPSESCAQGD EADGQKRQKT ESQVFTPRRY QLDVFEVAKA RNTIAMLDTG AGKTMIAVML
0101: MKEFGKKIDK SNNNGKIIFL APTVQLVTQQ CEVIKTHTDF EVELYCGASG VDHWTPQRWK EKVSKSQVMV MIPDVLLSAL GKAFLSLDMV SLMIFDECHR
0201: ATGKHPYSRI MKDYYHQSDH KPKVFGMTAS PVIRKGVSSN LDCEVQFTEL EKLLNAKIYA VADRAEIELC APSAKEVDRY YDPKTVCFKD LSEELGFLHS
0301: EYDALITTLQ NKPNYQNKES DEIAKESQRR LSNSSAKILY CIDDIGLLCA SEVTKIYIER GQRTGWLKKA SDATNIQSVA NSSFLLAEIS ALHLKFFEDM
0401: SRIIDKHLQQ GSDVLLNSES GCVEAIKTGY ISPKLYELIQ IFRSFSNCDH VRCLIFVDRK ITARAMERTM KKIGHLSHFT FSSLTGGSSS VDALTPKMQK
0501: DTLDSFRSGK VNLLFTTDVA EEGIDVTDCS CVIRFDLPKT TRSYMQSRGR ARQKDSQYIL MIERENVKQN NLISAILRSE KSMIETALNR DSEDLLPGFF
0601: PVEEKNEYLV GTTGAKVTAG SSISVIVQYC DKLLGDKYDT TKPLFEFTNH GDGFVCTLML PSSDMLPPLV GPKARNKKKA KQLVCLDACK QLHQLGVLTD
0701: SLCLSVEEPP LESVNKTDVL TSLAGVGTTK RKELHGTTRV CGLSGTWASE RTAVKLQGYR MKFLCDQVGQ KYSNFVLLID KTIAHEAANL DIDLFLHDKM
0801: VKASVSPCGL FELDVQQLEQ AKLFQALLFN GLFGKLFTGS KSSGVPREFI LSKDDTFIWN NPNMYLILPM DPTVESHDIS CINWRVIDEA ATAVKLLRKI
0901: YSEEKMNILG ILDFDQNDED LIHLANTSSD EKGTEFHTFA EYFEKKYDIV LRHPSQPLLV LKPSHRPHNI LSSKLRDEGN GEKKKGDTSD ITKANNRVHM
1001: PPELLIPLNF SDDILRTFYL FPSLMHRIET LMLASQLKSE ISYDDSNVSS FLILEAITTL RCSEDFSMER LELLGDSVLK YVVSCHLFLK FPNMDEGQLT
1101: SSRVDIISNA ALYGFGIEHK IQGYIRDAAF DPRRWLAPGQ LSIHPVPCNC RVNSEVVTED INVKVGQLCD KGHRWMCSKT ISDCVEAIIG AYYVEGGLRA
1201: AMAVLKWLGI NVEVEEELIG QFLSASVQTY LPKNDVIEKV EAKLGYVFLM KGLLLEALTH PSLQESAEGY SYERLEFLGD AVLDILLTRH LFYSHKDTDE
1301: GELTDLRSAS VNNENFAQLA VKHKLYQFLQ HSSGKLPENI TEYVDSLENP SMDKVNLLSD AALRGPKVLG DVVESIAGAI LIDRKLDLEV VWGIFKPLLS
1401: PIVTPEKLEL PPFRELLEWC NKSGYFLGIK CTDGIKRTDG DKIEATLDVQ LKETLLVRQG CGKSKKDAKA HAASMLLKDL EVEGLIVPKN ASNTQQFQDH
1501: RNIFDAMDIQ LSTPTRGKRS AGSKIAASLD KPVDWPVRMS KGGPRAGLYE FCKKLQWPAP NFDCAKVEQS VPTPQGQGFT FASTIKLHIP NSDVISLTGD
1601: CFADKKSAMD SAALLMLYEL QQRGRLQVQE IHVS
0101: MKEFGKKIDK SNNNGKIIFL APTVQLVTQQ CEVIKTHTDF EVELYCGASG VDHWTPQRWK EKVSKSQVMV MIPDVLLSAL GKAFLSLDMV SLMIFDECHR
0201: ATGKHPYSRI MKDYYHQSDH KPKVFGMTAS PVIRKGVSSN LDCEVQFTEL EKLLNAKIYA VADRAEIELC APSAKEVDRY YDPKTVCFKD LSEELGFLHS
0301: EYDALITTLQ NKPNYQNKES DEIAKESQRR LSNSSAKILY CIDDIGLLCA SEVTKIYIER GQRTGWLKKA SDATNIQSVA NSSFLLAEIS ALHLKFFEDM
0401: SRIIDKHLQQ GSDVLLNSES GCVEAIKTGY ISPKLYELIQ IFRSFSNCDH VRCLIFVDRK ITARAMERTM KKIGHLSHFT FSSLTGGSSS VDALTPKMQK
0501: DTLDSFRSGK VNLLFTTDVA EEGIDVTDCS CVIRFDLPKT TRSYMQSRGR ARQKDSQYIL MIERENVKQN NLISAILRSE KSMIETALNR DSEDLLPGFF
0601: PVEEKNEYLV GTTGAKVTAG SSISVIVQYC DKLLGDKYDT TKPLFEFTNH GDGFVCTLML PSSDMLPPLV GPKARNKKKA KQLVCLDACK QLHQLGVLTD
0701: SLCLSVEEPP LESVNKTDVL TSLAGVGTTK RKELHGTTRV CGLSGTWASE RTAVKLQGYR MKFLCDQVGQ KYSNFVLLID KTIAHEAANL DIDLFLHDKM
0801: VKASVSPCGL FELDVQQLEQ AKLFQALLFN GLFGKLFTGS KSSGVPREFI LSKDDTFIWN NPNMYLILPM DPTVESHDIS CINWRVIDEA ATAVKLLRKI
0901: YSEEKMNILG ILDFDQNDED LIHLANTSSD EKGTEFHTFA EYFEKKYDIV LRHPSQPLLV LKPSHRPHNI LSSKLRDEGN GEKKKGDTSD ITKANNRVHM
1001: PPELLIPLNF SDDILRTFYL FPSLMHRIET LMLASQLKSE ISYDDSNVSS FLILEAITTL RCSEDFSMER LELLGDSVLK YVVSCHLFLK FPNMDEGQLT
1101: SSRVDIISNA ALYGFGIEHK IQGYIRDAAF DPRRWLAPGQ LSIHPVPCNC RVNSEVVTED INVKVGQLCD KGHRWMCSKT ISDCVEAIIG AYYVEGGLRA
1201: AMAVLKWLGI NVEVEEELIG QFLSASVQTY LPKNDVIEKV EAKLGYVFLM KGLLLEALTH PSLQESAEGY SYERLEFLGD AVLDILLTRH LFYSHKDTDE
1301: GELTDLRSAS VNNENFAQLA VKHKLYQFLQ HSSGKLPENI TEYVDSLENP SMDKVNLLSD AALRGPKVLG DVVESIAGAI LIDRKLDLEV VWGIFKPLLS
1401: PIVTPEKLEL PPFRELLEWC NKSGYFLGIK CTDGIKRTDG DKIEATLDVQ LKETLLVRQG CGKSKKDAKA HAASMLLKDL EVEGLIVPKN ASNTQQFQDH
1501: RNIFDAMDIQ LSTPTRGKRS AGSKIAASLD KPVDWPVRMS KGGPRAGLYE FCKKLQWPAP NFDCAKVEQS VPTPQGQGFT FASTIKLHIP NSDVISLTGD
1601: CFADKKSAMD SAALLMLYEL QQRGRLQVQE IHVS
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.