Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30942 | Canola | nucleus | 78.84 | 95.72 |
| Bra019456.1-P | Field mustard | nucleus | 90.4 | 95.65 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 78.18 | 75.76 |
| GSMUA_Achr10P... | Banana | nucleus | 20.57 | 47.51 |
| KRH52276 | Soybean | cytosol | 14.44 | 43.94 |
| KRH61605 | Soybean | nucleus | 47.16 | 43.13 |
| Solyc08g067210.2.1 | Tomato | nucleus | 40.24 | 43.08 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 27.82 | 41.12 |
| KXG33962 | Sorghum | nucleus | 41.02 | 37.9 |
| Zm00001d042432_P007 | Maize | cytosol | 41.28 | 37.89 |
| Os01t0909200-01 | Rice | cytosol | 40.82 | 37.86 |
| TraesCS3D01G411200.6 | Wheat | nucleus | 39.26 | 36.78 |
| TraesCS3A01G415400.2 | Wheat | nucleus | 40.3 | 36.77 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 40.43 | 36.74 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 39.91 | 36.43 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 45.46 | 35.82 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 37.95 | 35.71 |
| Os10t0485600-01 | Rice | cytosol, plastid | 38.01 | 35.55 |
| TraesCS1D01G158000.2 | Wheat | nucleus | 37.56 | 35.32 |
| OQU91611 | Sorghum | nucleus, plastid | 37.49 | 35.06 |
| Zm00001d032655_P006 | Maize | nucleus | 35.86 | 34.97 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 36.38 | 34.86 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 37.56 | 34.17 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 5.88 | 31.69 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 5.81 | 31.34 |
| CDY22924 | Canola | cytosol | 5.68 | 30.74 |
| CDY48286 | Canola | cytosol | 5.68 | 30.74 |
| CDY54644 | Canola | cytosol | 6.21 | 28.36 |
| GSMUA_Achr10P... | Banana | cytosol | 7.71 | 27.9 |
| CDY29825 | Canola | plastid | 6.53 | 26.67 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 23.45 | 25.86 |
| CDY50692 | Canola | nucleus | 23.45 | 25.85 |
| CDY50691 | Canola | nucleus | 8.88 | 24.24 |
| CDY35811 | Canola | nucleus | 25.02 | 23.34 |
| CDX92469 | Canola | nucleus, plastid | 24.95 | 23.26 |
| CDY15207 | Canola | nucleus | 27.04 | 22.89 |
| CDX90002 | Canola | nucleus | 26.98 | 22.79 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | GO:A0A078G919 |
| UniProt:A0A078G919 | EnsemblPlants:CDY21223 | ProteinID:CDY21223 | ProteinID:CDY21223.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0031047 | GO:GO:0090501 |
| GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00015447001 | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 |
| InterPro:IPR036389 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 |
| PFAM:PF02170 | ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51194 | PANTHER:PTHR14950 |
| PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 |
| SUPFAM:SSF52540 | SUPFAM:SSF69065 | UniParc:UPI0004EF1C73 | SEG:seg | : | : |
Description
BnaC03g54010DBnaC03g54010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G919]
Coordinates
chrLK032117:+:198236..205305
Molecular Weight (calculated)
172259.0 Da
IEP (calculated)
6.416
GRAVY (calculated)
-0.359
Length
1531 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGDEPRGGG AGSDSLSVKR KFSEIDDDSS PMNGSSEWKV YEVAQTRNSI AVLETGIDKF GHCCEIREHV NLKVEDYYGA KGVDKWTSHR WEEELSKNEA
0101: HALRGGFLKV EMVRLLVIDE CHRTTGNHPY AMIMKEFYHK ATDKPRMFGL TTTAAIRKGM LFRVSSLRNY QVSELENLMD SQIFNPQGKK GMDKFGTNVK
0201: EGPVFYDPPP LCRLELKDKL RTSHLKFDAS LLSLLQELEK GNCQDVEENK FKAYQKRLSN DYHDILHCLH SLGLICAHLA AEICLEKILE TETYNECSMV
0301: CKEFLSDVLS TLGLFLQQEE KDPVDLQQDN PSAVISELVS PKLQELFHLL DSLRGEMQKP CLIIVERIIT AEVIERYLKK QASLGYLYVL YLVGDNASTH
0401: ALAQKMQDSF HVGKVNLVFI ADVVEEGFHM PDCSCMVCFD LPKTVCSYSQ SQELAEQSNS KSIMFLERGN PSQRDHLYDL MRRQVPKETP NRRLCPPPEA
0501: NGQDVKENGT TVIPDPNTTV HDEPAPKEQS ANKRLCQLQV LDKNLLQCSA KEKAASSKSK SSSSAAGSKK RKELHGTTRA NALSGIWGEN LDGAIFQAYK
0601: LDFWSNISGD AYSSFSLLIE STLADDVGNV EMGLYLVRKY IKASVSPSGQ IRLSQEEMVK AKCFQQFFFN GMFGKLFVGS KSLGTKREFL LQTDTSSLWH
0701: PSFMFLMLPV ETSDLVSSAT VDWSAINSCA CVVDFLKKNS LLELQVGEEN HCNTSSGQEG TQKKDTETNL IHFANASSDK NSIEEIVVIA IHTGRIYSIV
0801: EAVKDSSAMS PFEDEASLEY ATYAEYFNKK YGIVLAHPNQ PLLKLKQSHH AHNLLVNFND EVIEKKEPKV GIVRKTKPNI HAHLPPELLV RIDVPRSVIK
0901: SIYLLPSVMH RLESLTLASQ LREEIGCSID NFSISSTSVL EALTTLTSAE AFSMERLELL GDSVLKYVVS CSLYLKYPNK DEGQLSRERQ SIISNSNLHR
1001: LATDRKLQGY IRNGAFEPRR WTAPGQCSLF PVPCKCGIDS REVPLEPRFF TENMTIKIGK SCDMGHRWTV SKSVSDCAEA LIGAYYVSGG LTAALHMMKW
1101: LGLDVEFDRE LVNEAINRVS LRCYIPKDDE LTELETKIRR EFSSKFLLKE AITHSSVHES YSYERLEFLG DSVLDFLITR HLFNTYEKTG PGEMTDLRSA
1201: CVNNENFAQV AVKNNLHTHL QRCATVLETQ LKEYLKSFSK PDETGRTIPS IQGPKALGDM VESIAGALLI DTRLDLEEVW KVFEPLLSPL VTPDKLQLPP
1301: FRELNELCDS LGYFFRVKCA NDGVKAQAMI QLQLDDILLT GDGSEQTNKL ALGKAASHLL KQLEMRNISR KTGNGDDQSS MDIKLACNLS DRETPSSDSV
1401: EMQGTVVPVI GPINMKKGGP RGTLHEFCKK HLWPMPTFDT LEDKSRTPFE FTDGNEKRTS FSSFISTITL RIPNREAVMY SGEARPDKKS SFDSAVVELL
1501: YELERRMILT IKKLKLLTGF NRSKPLWDPR N
0101: HALRGGFLKV EMVRLLVIDE CHRTTGNHPY AMIMKEFYHK ATDKPRMFGL TTTAAIRKGM LFRVSSLRNY QVSELENLMD SQIFNPQGKK GMDKFGTNVK
0201: EGPVFYDPPP LCRLELKDKL RTSHLKFDAS LLSLLQELEK GNCQDVEENK FKAYQKRLSN DYHDILHCLH SLGLICAHLA AEICLEKILE TETYNECSMV
0301: CKEFLSDVLS TLGLFLQQEE KDPVDLQQDN PSAVISELVS PKLQELFHLL DSLRGEMQKP CLIIVERIIT AEVIERYLKK QASLGYLYVL YLVGDNASTH
0401: ALAQKMQDSF HVGKVNLVFI ADVVEEGFHM PDCSCMVCFD LPKTVCSYSQ SQELAEQSNS KSIMFLERGN PSQRDHLYDL MRRQVPKETP NRRLCPPPEA
0501: NGQDVKENGT TVIPDPNTTV HDEPAPKEQS ANKRLCQLQV LDKNLLQCSA KEKAASSKSK SSSSAAGSKK RKELHGTTRA NALSGIWGEN LDGAIFQAYK
0601: LDFWSNISGD AYSSFSLLIE STLADDVGNV EMGLYLVRKY IKASVSPSGQ IRLSQEEMVK AKCFQQFFFN GMFGKLFVGS KSLGTKREFL LQTDTSSLWH
0701: PSFMFLMLPV ETSDLVSSAT VDWSAINSCA CVVDFLKKNS LLELQVGEEN HCNTSSGQEG TQKKDTETNL IHFANASSDK NSIEEIVVIA IHTGRIYSIV
0801: EAVKDSSAMS PFEDEASLEY ATYAEYFNKK YGIVLAHPNQ PLLKLKQSHH AHNLLVNFND EVIEKKEPKV GIVRKTKPNI HAHLPPELLV RIDVPRSVIK
0901: SIYLLPSVMH RLESLTLASQ LREEIGCSID NFSISSTSVL EALTTLTSAE AFSMERLELL GDSVLKYVVS CSLYLKYPNK DEGQLSRERQ SIISNSNLHR
1001: LATDRKLQGY IRNGAFEPRR WTAPGQCSLF PVPCKCGIDS REVPLEPRFF TENMTIKIGK SCDMGHRWTV SKSVSDCAEA LIGAYYVSGG LTAALHMMKW
1101: LGLDVEFDRE LVNEAINRVS LRCYIPKDDE LTELETKIRR EFSSKFLLKE AITHSSVHES YSYERLEFLG DSVLDFLITR HLFNTYEKTG PGEMTDLRSA
1201: CVNNENFAQV AVKNNLHTHL QRCATVLETQ LKEYLKSFSK PDETGRTIPS IQGPKALGDM VESIAGALLI DTRLDLEEVW KVFEPLLSPL VTPDKLQLPP
1301: FRELNELCDS LGYFFRVKCA NDGVKAQAMI QLQLDDILLT GDGSEQTNKL ALGKAASHLL KQLEMRNISR KTGNGDDQSS MDIKLACNLS DRETPSSDSV
1401: EMQGTVVPVI GPINMKKGGP RGTLHEFCKK HLWPMPTFDT LEDKSRTPFE FTDGNEKRTS FSSFISTITL RIPNREAVMY SGEARPDKKS SFDSAVVELL
1501: YELERRMILT IKKLKLLTGF NRSKPLWDPR N
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.