Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20320.1 | CDX76663 | AT3G62800.1 | 24352449 |
| AT5G20320.1 | CDY11449 | AT3G62800.1 | 24352449 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002293.1-P | Field mustard | nucleus, plastid | 97.87 | 97.87 |
| CDX92469 | Canola | nucleus, plastid | 97.87 | 97.81 |
| AT5G20320.1 | Thale cress | cytosol | 81.41 | 78.5 |
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 43.39 | 57.47 |
| KRH20103 | Soybean | nucleus | 55.45 | 55.59 |
| KRH03544 | Soybean | nucleus | 55.21 | 55.38 |
| Solyc07g005030.2.1 | Tomato | cytosol | 49.48 | 52.86 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 46.68 | 47.61 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 38.7 | 46.59 |
| Os04t0509300-02 | Rice | cytosol | 46.74 | 46.29 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 45.52 | 45.97 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 45.46 | 45.96 |
| OQU81938 | Sorghum | mitochondrion | 46.62 | 45.95 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 44.42 | 44.59 |
| TraesCS2B01G383300.2 | Wheat | plastid | 45.52 | 43.46 |
| CDY50691 | Canola | nucleus | 11.88 | 34.76 |
| CDY50692 | Canola | nucleus | 27.3 | 32.25 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 27.0 | 31.92 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 5.12 | 29.58 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 5.12 | 29.58 |
| CDY22924 | Canola | cytosol | 4.94 | 28.62 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 7.01 | 28.47 |
| CDY48286 | Canola | cytosol | 4.81 | 27.92 |
| CDY30942 | Canola | nucleus | 19.99 | 26.01 |
| CDY54644 | Canola | cytosol | 5.24 | 25.67 |
| CDY21223 | Canola | nucleus | 23.34 | 25.02 |
| CDY29825 | Canola | plastid | 5.67 | 24.8 |
| CDY15207 | Canola | nucleus | 26.81 | 24.32 |
| CDX90002 | Canola | nucleus | 26.75 | 24.23 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:16.10.1.3 | MapMan:16.10.1.4.2 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | GO:A0A078HDK5 | UniProt:A0A078HDK5 | EnsemblPlants:CDY35811 | ProteinID:CDY35811 | ProteinID:CDY35811.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016075 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0090501 |
| GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00059315001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| HAMAP:MF_00104 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | PFAM:PF00035 | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF03368 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF15 |
| InterPro:RNase_III | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0004EE2A78 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
BnaC09g37430DBnaC09g37430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDK5]
Coordinates
chrLK032362:+:30192..39635
Molecular Weight (calculated)
184491.0 Da
IEP (calculated)
6.634
GRAVY (calculated)
-0.211
Length
1641 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPDREIGDDA SDTNLSSSFA SSSSSFSSYY SAAGASTDDH AAKMEKDPRK IARRYQLELC EKAVEENVIV YLGTGCGKTH IAVMVIYELG PLILSPRKSV
0101: CIFLAPTVAL VEQQALVIAK SINFKVATHC GGNRTVTTHS DWEREVSENE VLVMTPQILL HNLQHCFIRM EWISLLILDE CHHAQEQSNH PYAQILKVFY
0201: KTEGVKGPRI FGMTASPVVG KGSFQSENLS KSINSLENLL NAKVYSVESN VQLDGFVSSP IVKVYYYQTG GSEASQSTNI YEKYENMLED IKQGCLASLK
0301: QQIDTHQTQV LLNMKKLLKR THDNLIYSLV NLGLWGAIQA ARIQLNSDRN VHQEPLEENN KSKICITYLS LAAEVLSSKV AKDENASELI SLPALKEPFF
0401: SRKLLQLIKI LSAFRIEPHM KCIIFVNRIV TARTLSCILN SLKLLESWKS DFLVGLSSGV KSMSRKSMKT ILERFQSKEL NLLVATKVGE EGLDIQTCCL
0501: VIRFDLPETV TSFIQSRGRA RMPKSEYAFL VDRGNEKEMD LIGNFKVNED RMNLEITSRT SEETCPRLDD EVYRVHETGA CISGGSSISL LYKYCSRLPH
0601: DEFFQPKPEF QFKPVDEFGG TICRITLPAN APISEIVSSL LPSIEAAKRN ACLKAVYKLH SLGVLNNFLL PDSNEETEDE LSDEEFDSDK VEGETCSRGE
0701: LYEMIVPDLF KQKWDPSKSC VNLQSYYIRF VPHPADRIYK KFGLFMKSPL PIEAETMDFD LHLAHQRSVS VKIFPKGDAN FDNDEIRLAE RFQEVALKII
0801: FERRELITEF VPLGLQDSFR TSKSTFYLLL PINLDDSESV LSVDWANIRS CLSSPIFKAP SGLVEDMDPP AGSHLKLANG CWSIDDVKNS VVFATHKKQF
0901: YFVTDICHGR NGFSAIRKSI TETHLESIYN SYGVKLKHPL QPLLRLKPLS YVRNLLHNRK RENLEPNELE EYFIEIPPEL SQLKIKGLSK DIGSSLSLLP
1001: SVMHRMENLL VAIELKHMLS ASIPEIAEVS GHRVLEALTT EKCQERFSLE RLEVLGDAFL KFAVSRHLFL HHDRLDEGEL TRRRSNAVNN SNLFRLATRR
1101: NLQVYIRDQA FDPTQFFALG HPCRVTCDEA AMKEVHSLDK VPGLLESNTG EIRCSKGHHW LHKKTIADVV EALVGAFLVD SGFKGAIEFL KWIGINVDFE
1201: SLQVRDACVA SKRYMPLTTC FDLAALESLL GYKFLHKGLL LQAFIHPSYN RHGGGCYQRL EFLGDAVLDY LMTSYFFSVF PKLKPGQLTD LRSLSVNNKA
1301: LANVAVSFSL QRFLFCDSTY LHDAIKDYTN FVTASPLASG PSEGPKCPKV LGDLIESFLG ALFLDCGFDL NHVWRIMLSF LDPVKNLSNL QLSPVKELLE
1401: YCQSYKWDQE ISATKKDGAF SVELKVTKKG SCLTASATGR NKKESTKKAA QLMLTNLKAH GHIKTSNPLE DVLKNSIRNE AKLIGYDEEP IDVVDLDGLD
1501: VENVNIQDSF EEDPVTESKT SETSSSYIIR RVLTNAPPSE KEESLPQKTI KEAGGSIIKT AKSLLRETCV ANCWKTPEFV CCEEGPAHLK TFSYKVILEV
1601: VDAPNMTLEC YGETKPTKKS ASEQAAQAAL WCLDHAGFLR R
0101: CIFLAPTVAL VEQQALVIAK SINFKVATHC GGNRTVTTHS DWEREVSENE VLVMTPQILL HNLQHCFIRM EWISLLILDE CHHAQEQSNH PYAQILKVFY
0201: KTEGVKGPRI FGMTASPVVG KGSFQSENLS KSINSLENLL NAKVYSVESN VQLDGFVSSP IVKVYYYQTG GSEASQSTNI YEKYENMLED IKQGCLASLK
0301: QQIDTHQTQV LLNMKKLLKR THDNLIYSLV NLGLWGAIQA ARIQLNSDRN VHQEPLEENN KSKICITYLS LAAEVLSSKV AKDENASELI SLPALKEPFF
0401: SRKLLQLIKI LSAFRIEPHM KCIIFVNRIV TARTLSCILN SLKLLESWKS DFLVGLSSGV KSMSRKSMKT ILERFQSKEL NLLVATKVGE EGLDIQTCCL
0501: VIRFDLPETV TSFIQSRGRA RMPKSEYAFL VDRGNEKEMD LIGNFKVNED RMNLEITSRT SEETCPRLDD EVYRVHETGA CISGGSSISL LYKYCSRLPH
0601: DEFFQPKPEF QFKPVDEFGG TICRITLPAN APISEIVSSL LPSIEAAKRN ACLKAVYKLH SLGVLNNFLL PDSNEETEDE LSDEEFDSDK VEGETCSRGE
0701: LYEMIVPDLF KQKWDPSKSC VNLQSYYIRF VPHPADRIYK KFGLFMKSPL PIEAETMDFD LHLAHQRSVS VKIFPKGDAN FDNDEIRLAE RFQEVALKII
0801: FERRELITEF VPLGLQDSFR TSKSTFYLLL PINLDDSESV LSVDWANIRS CLSSPIFKAP SGLVEDMDPP AGSHLKLANG CWSIDDVKNS VVFATHKKQF
0901: YFVTDICHGR NGFSAIRKSI TETHLESIYN SYGVKLKHPL QPLLRLKPLS YVRNLLHNRK RENLEPNELE EYFIEIPPEL SQLKIKGLSK DIGSSLSLLP
1001: SVMHRMENLL VAIELKHMLS ASIPEIAEVS GHRVLEALTT EKCQERFSLE RLEVLGDAFL KFAVSRHLFL HHDRLDEGEL TRRRSNAVNN SNLFRLATRR
1101: NLQVYIRDQA FDPTQFFALG HPCRVTCDEA AMKEVHSLDK VPGLLESNTG EIRCSKGHHW LHKKTIADVV EALVGAFLVD SGFKGAIEFL KWIGINVDFE
1201: SLQVRDACVA SKRYMPLTTC FDLAALESLL GYKFLHKGLL LQAFIHPSYN RHGGGCYQRL EFLGDAVLDY LMTSYFFSVF PKLKPGQLTD LRSLSVNNKA
1301: LANVAVSFSL QRFLFCDSTY LHDAIKDYTN FVTASPLASG PSEGPKCPKV LGDLIESFLG ALFLDCGFDL NHVWRIMLSF LDPVKNLSNL QLSPVKELLE
1401: YCQSYKWDQE ISATKKDGAF SVELKVTKKG SCLTASATGR NKKESTKKAA QLMLTNLKAH GHIKTSNPLE DVLKNSIRNE AKLIGYDEEP IDVVDLDGLD
1501: VENVNIQDSF EEDPVTESKT SETSSSYIIR RVLTNAPPSE KEESLPQKTI KEAGGSIIKT AKSLLRETCV ANCWKTPEFV CCEEGPAHLK TFSYKVILEV
1601: VDAPNMTLEC YGETKPTKKS ASEQAAQAAL WCLDHAGFLR R
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.