Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50692 | Canola | nucleus | 96.26 | 38.88 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 93.94 | 37.97 |
| CDY35811 | Canola | nucleus | 34.76 | 11.88 |
| CDX92469 | Canola | nucleus, plastid | 34.58 | 11.81 |
| CDY15207 | Canola | nucleus | 29.77 | 9.23 |
| CDX90002 | Canola | nucleus | 29.59 | 9.16 |
| CDY21223 | Canola | nucleus | 24.24 | 8.88 |
| CDY30942 | Canola | nucleus | 12.48 | 5.55 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 1.43 | 2.82 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 1.25 | 2.46 |
| CDY22924 | Canola | cytosol | 1.07 | 2.12 |
| CDY48286 | Canola | cytosol | 1.07 | 2.12 |
| CDY29825 | Canola | plastid | 0.53 | 0.8 |
| CDY54644 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1320.30 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IKZ4 | UniProt:A0A078IKZ4 | EnsemblPlants:CDY50691 |
| ProteinID:CDY50691 | ProteinID:CDY50691.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00097267001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EEF14D |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g47920DBnaC05g47920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKZ4]
Coordinates
chrLK032932:-:18871..22350
Molecular Weight (calculated)
63094.6 Da
IEP (calculated)
8.770
GRAVY (calculated)
-0.068
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIVDMEIES ADQVSPLPFA RSYQVEALEK AMKRNTIVYL ETGSGKTLIA IMLLRSYAYL FRKPSPCFSV FLVPQVVLVT QQAEALKRHT DLKVGMYWGS
101: IGVDSWDAPT WKQEVDKYEV LVMTPAILLS ALRHSFLTLN MIKVLIFDEC HHARGNHAYA CILKEFYHKE LKSATSSVPR IFGMTASPVK TKGENLDSYW
201: KKIHELESLM NSKVYTCESE SVLARFVPFS TPSFKLYQHM EIPSSTRAGI VAELEKLAKE HLLALATLDL KSSTVNTIKK RLSKICSSIT YCLDELGILM
301: ALKAAQSFSV SQNDFVLWGQ QEKFRETSIK KFCSNASQAI LAYIPDGPYW SVANIERNLE AGLITSKILC LVESLLGYRS LEKIRCIIFV ERVIAAMVLE
401: SFLNEILPTY NSWKTKYVAG NNSGLQSQTR KKQNKTVEDF RKGLVNIIVS TSILEEGLDV QSCNLVVGFD PASNICSFIQ SQGRARMPNS DYLMMVESGD
501: MGTRSRLKKY ISGAKRMRED SLSHSLVPYQ PLPDDSSGEV YRVDSTGAIV THNQAFVRRI S
101: IGVDSWDAPT WKQEVDKYEV LVMTPAILLS ALRHSFLTLN MIKVLIFDEC HHARGNHAYA CILKEFYHKE LKSATSSVPR IFGMTASPVK TKGENLDSYW
201: KKIHELESLM NSKVYTCESE SVLARFVPFS TPSFKLYQHM EIPSSTRAGI VAELEKLAKE HLLALATLDL KSSTVNTIKK RLSKICSSIT YCLDELGILM
301: ALKAAQSFSV SQNDFVLWGQ QEKFRETSIK KFCSNASQAI LAYIPDGPYW SVANIERNLE AGLITSKILC LVESLLGYRS LEKIRCIIFV ERVIAAMVLE
401: SFLNEILPTY NSWKTKYVAG NNSGLQSQTR KKQNKTVEDF RKGLVNIIVS TSILEEGLDV QSCNLVVGFD PASNICSFIQ SQGRARMPNS DYLMMVESGD
501: MGTRSRLKKY ISGAKRMRED SLSHSLVPYQ PLPDDSSGEV YRVDSTGAIV THNQAFVRRI S
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.