Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 97.18 | 97.18 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 97.18 | 97.18 |
| CDY48286 | Canola | cytosol | 75.7 | 75.97 |
| CDY22924 | Canola | cytosol | 75.35 | 75.62 |
| AT4G15417.2 | Thale cress | mitochondrion | 59.15 | 58.13 |
| PGSC0003DMT400086351 | Potato | cytosol | 32.04 | 44.83 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 45.07 | 44.6 |
| Solyc05g041920.2.1 | Tomato | cytosol | 40.14 | 42.86 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 42.61 | 41.58 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 40.49 | 39.25 |
| EES13704 | Sorghum | cytosol | 40.14 | 39.18 |
| PGSC0003DMT400001808 | Potato | cytosol | 34.51 | 39.04 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 39.79 | 38.57 |
| Os06t0358800-01 | Rice | cytosol | 39.79 | 37.79 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 40.49 | 37.22 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 40.49 | 37.22 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 40.49 | 36.74 |
| Solyc07g049150.2.1 | Tomato | cytosol | 34.51 | 36.57 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 39.79 | 36.22 |
| Zm00001d032362_P002 | Maize | mitochondrion | 40.49 | 34.95 |
| Solyc05g024210.1.1 | Tomato | cytosol | 41.2 | 34.82 |
| HORVU7Hr1G082860.4 | Barley | plastid | 40.49 | 32.03 |
| CDY54644 | Canola | cytosol | 33.45 | 28.36 |
| TraesCS2D01G479300.1 | Wheat | plastid | 32.75 | 26.88 |
| CDY29825 | Canola | plastid | 32.75 | 24.8 |
| CDY30942 | Canola | nucleus | 31.34 | 7.06 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 32.04 | 6.56 |
| CDY50692 | Canola | nucleus | 31.69 | 6.48 |
| CDY21223 | Canola | nucleus | 31.34 | 5.81 |
| CDY15207 | Canola | nucleus | 36.27 | 5.69 |
| CDX90002 | Canola | nucleus | 36.27 | 5.68 |
| CDY35811 | Canola | nucleus | 29.58 | 5.12 |
| CDX92469 | Canola | nucleus, plastid | 28.87 | 4.99 |
| GSMUA_Achr10P... | Banana | extracellular | 2.46 | 3.74 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 2.11 | 1.57 |
| CDY50691 | Canola | nucleus | 2.46 | 1.25 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:3.30.160.20 | MapMan:35.1 | GO:A0A078F5P0 | UniProt:A0A078F5P0 | EnsemblPlants:CDY09765 |
| ProteinID:CDY09765 | ProteinID:CDY09765.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00031464001 | InterPro:IPR000999 | InterPro:IPR036389 | PFAM:PF00636 |
| PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0004EEABF5 | : | : | : |
Description
BnaC07g32960DBnaC07g32960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5P0]
Coordinates
chrLK031998:-:905379..906945
Molecular Weight (calculated)
32391.0 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.269
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: METQLSNADA DSLQRLLNLS LGANDYTAKI INGSRSANST NPQCQPLDIE FVEKILNYKF KDKSLLLQAF TDATFDEICV SYERLEFLGD TVLNMVITKY
101: LYNRYGDCSP GLLTNLRAVN VDTEKLARVA VKHNLHRCLR HKKPLLEDQI LEFTKAMETY PLHSRGLLKV PKSLADIVES TIGALYTDCD SFETVWKVVM
201: PLLEPIISLD KLENHPMTEL HEMCQKNNLK LRFDDSTWEV DKRVLVFIED KLVGRGHHLA KKDSAKNCAA KDALDNFSYL FTKI
101: LYNRYGDCSP GLLTNLRAVN VDTEKLARVA VKHNLHRCLR HKKPLLEDQI LEFTKAMETY PLHSRGLLKV PKSLADIVES TIGALYTDCD SFETVWKVVM
201: PLLEPIISLD KLENHPMTEL HEMCQKNNLK LRFDDSTWEV DKRVLVFIED KLVGRGHHLA KKDSAKNCAA KDALDNFSYL FTKI
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.