Factsheet for Bra012789.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90592	Canola	cytosol, nucleus, peroxisome	100.0	100.0
CDY09765	Canola	cytosol, nucleus, peroxisome	97.18	97.18
Bra039552.1-P	Field mustard	cytosol	77.11	77.39
AT4G15417.2	Thale cress	mitochondrion	59.86	58.82
VIT_12s0059g01120.t01	Wine grape	cytosol	45.42	44.95
PGSC0003DMT400086351	Potato	cytosol	31.69	44.34
Solyc05g041920.2.1	Tomato	cytosol	40.14	42.86
PGSC0003DMT400053499	Potato	mitochondrion	42.96	41.92
Solyc07g049160.2.1	Tomato	mitochondrion	40.49	39.25
EES13704	Sorghum	cytosol	40.14	39.18
PGSC0003DMT400001808	Potato	cytosol	34.51	39.04
PGSC0003DMT400001805	Potato	mitochondrion	39.79	38.57
Os06t0358800-01	Rice	cytosol	39.79	37.79
TraesCS7B01G248100.1	Wheat	cytosol	40.49	37.22
TraesCS7D01G344100.1	Wheat	cytosol	40.49	37.22
TraesCS7D01G344200.1	Wheat	cytosol	40.49	36.74
Solyc07g049150.2.1	Tomato	cytosol	34.51	36.57
TraesCS7A01G336500.1	Wheat	cytosol	39.79	36.22
Solyc05g024210.1.1	Tomato	cytosol	41.9	35.42
Zm00001d032362_P002	Maize	mitochondrion	40.49	34.95
HORVU7Hr1G082860.4	Barley	plastid	40.49	32.03
Bra035784.1-P	Field mustard	cytosol	33.45	28.36
TraesCS2D01G479300.1	Wheat	plastid	33.1	27.17
Bra031999.1-P	Field mustard	nucleus	31.69	7.05
Bra019456.1-P	Field mustard	nucleus	31.69	6.22
Bra033293.1-P	Field mustard	cytosol, nucleus, plastid	36.62	5.63
Bra002293.1-P	Field mustard	nucleus, plastid	28.87	5.0
GSMUA_Achr10P...	Banana	extracellular	2.46	3.74
GSMUA_Achr9P22470_001	Banana	cytosol	2.11	1.57

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	EnsemblPlantsGene:Bra012789	EnsemblPlants:Bra012789.1	EnsemblPlants:Bra012789.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502
InterPro:IPR000999	InterPro:IPR036389	UniProt:M4D8H9	PFAM:PF00636	PFscan:PS50142	PANTHER:PTHR14950
PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065
UniParc:UPI00025407D4	:	:	:	:	:

Description

AT4G15417 (E=2e-084) ATRTL1 | ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III

Coordinates

chrA03:+:22253761..22255293

Molecular Weight (calculated)

32465.1 Da

IEP (calculated)

6.937

GRAVY (calculated)

-0.326

Length

284 amino acids

Sequence
(BLAST)

001: METQLSNADA DSLQRLLNLS LGAKENTAKI VNGSRSANST NPQYQPLDIE FVEKILNYKF KDKSLLLQAF TDATFDENCV SYERLEFLGD TVLNMVITKY
101: LYNRYGDCSP GLLTNLRAVN VDTEKLARVA VKHNLHRCLR HKKPLLEDQI LEFTKAMETY PLHSRGLLKV PKSLADIVES TIGALYTDCD SFETVWKVVM
201: PLLEPIISLD KLENHPMTEL HEMCQKKNLK LRFDDSTWEV DKRVLVFIED KLVGRGHHLA KKDSAKNCAA KDALDNFSYF FTKI

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.