Factsheet for HORVU7Hr1G082860.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G248100.1	Wheat	cytosol	77.99	90.61
TraesCS7D01G344100.1	Wheat	cytosol	77.44	89.97
TraesCS7D01G344200.1	Wheat	cytosol	77.44	88.82
TraesCS7A01G336500.1	Wheat	cytosol	76.32	87.82
EES13704	Sorghum	cytosol	56.27	69.42
Os06t0358800-01	Rice	cytosol	56.55	67.89
Zm00001d032362_P002	Maize	mitochondrion	54.87	59.88
Solyc05g041920.2.1	Tomato	cytosol	30.64	41.35
VIT_12s0059g01120.t01	Wine grape	cytosol	32.59	40.77
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	32.03	40.49
CDX90592	Canola	cytosol, nucleus, peroxisome	32.03	40.49
CDY09765	Canola	cytosol, nucleus, peroxisome	32.03	40.49
Bra039552.1-P	Field mustard	cytosol	31.75	40.28
CDY22924	Canola	cytosol	31.75	40.28
CDY48286	Canola	cytosol	31.75	40.28
PGSC0003DMT400086351	Potato	cytosol	22.56	39.9
PGSC0003DMT400053499	Potato	mitochondrion	30.64	37.8
AT4G15417.2	Thale cress	mitochondrion	30.08	37.37
PGSC0003DMT400001808	Potato	cytosol	25.91	37.05
PGSC0003DMT400001805	Potato	mitochondrion	28.97	35.49
Solyc07g049160.2.1	Tomato	mitochondrion	28.69	35.15
Solyc07g049150.2.1	Tomato	cytosol	25.63	34.33
Solyc05g024210.1.1	Tomato	cytosol	29.25	31.25
HORVU7Hr1G115000.1	Barley	nucleus	15.04	28.72
HORVU7Hr1G115100.2	Barley	plastid	32.03	28.19
HORVU5Hr1G019300.8	Barley	plastid	29.25	7.12
HORVU1Hr1G042710.5	Barley	cytosol, mitochondrion, nucleus	30.08	6.42
HORVU2Hr1G088270.9	Barley	endoplasmic reticulum	27.86	6.12
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	28.69	6.11
GSMUA_Achr10P...	Banana	extracellular	3.06	5.88
HORVU4Hr1G084890.7	Barley	cytosol, nucleus, plastid	31.75	5.71
GSMUA_Achr9P22470_001	Banana	cytosol	3.9	3.66

Protein Annotations

Gene3D:1.10.1520.10	MapMan:35.1	UniProt:A0A287X487	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:HORVU7Hr1G082860	EnsemblPlants:HORVU7Hr1G082860.4	InterPro:IPR000999
InterPro:IPR036389	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI000B4864E5
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:498514419..498517011

Molecular Weight (calculated)

39742.2 Da

IEP (calculated)

5.692

GRAVY (calculated)

-0.433

Length

359 amino acids

Sequence
(BLAST)

001: RDLPRPAPPR LARAPVLHSI APIPSVSDRP PETSRKPVRR RVAPPLSITP LPRDRAMDPQ PQPPAADSDS DAMPREQQRE EAPPGYVPPI SPEDVAAVEA
101: LLGYEFKDKS LVSEALTHGS FYLPYRSGDS TYERLEYLGD AVLTCLVSRD VFLTYRDLPP GPLTRLRAAN VDKEKLARVA VDHGIHRFLR HKAPKLDEQV
201: ADFVKELCQY EYHSNGLLDA PKVLSDIVES LIGAIYLDSK HNQELVWQVF RNLADPLISL ETLGRHPVSE LLEFGQKTGR TVDIFKDGWV KDTKVDVFVD
301: GVLVASATYA QKKEIASNRA AKAALDKLKE MSGQSDVQSA PGEAPEPLDE LDRSGALQL

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.