Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 93.54 | 94.73 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 93.84 | 94.6 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 93.89 | 92.64 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 82.47 | 87.47 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 83.83 | 86.78 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 83.53 | 86.38 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 67.75 | 74.42 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 69.95 | 71.83 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 69.55 | 71.34 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 69.55 | 71.3 |
| Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 65.35 | 70.69 |
| CDY15207 | Canola | nucleus | 63.85 | 70.48 |
| CDX90002 | Canola | nucleus | 63.85 | 70.36 |
| AT1G01040.2 | Thale cress | nucleus | 67.0 | 70.05 |
| Solyc10g005130.2.1 | Tomato | nucleus | 65.75 | 69.54 |
| PGSC0003DMT400029301 | Potato | nucleus | 66.65 | 69.54 |
| HORVU7Hr1G082860.4 | Barley | plastid | 5.71 | 31.75 |
| HORVU7Hr1G115100.2 | Barley | plastid | 6.31 | 30.88 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 25.79 | 30.6 |
| HORVU5Hr1G019300.8 | Barley | plastid | 22.23 | 30.1 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 25.29 | 29.97 |
| HORVU7Hr1G115000.1 | Barley | nucleus | 2.75 | 29.26 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 23.18 | 28.32 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:16.10.2.1.1 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | UniProt:A0A287PXZ9 |
| InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0019538 |
| GO:GO:0031047 | GO:GO:0035196 | GO:GO:0040029 | GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:HORVU4Hr1G084890 |
| EnsemblPlants:HORVU4Hr1G084890.7 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | PFAM:PF04851 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF44 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000B46B9A3 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:630334902..630347021
Molecular Weight (calculated)
222198.0 Da
IEP (calculated)
6.660
GRAVY (calculated)
-0.388
Length
1997 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGGGGGGGA GEHPGAVSYW YDACEDDEDA SLLCGIDFAS SADFDPGLMP LPAMDCGIDF AASADFNPGF MPAMDCGGVD DGFVAEIDRI LESIDAETAP
0101: APQPPPVAPP QPPAERVQEA AAIAAVANNA VAVVCSEQRS QAGGPRNEAR SVEARKETRS VGPRKETTSA EPRKETRRET QGGSANGGRG GEWRDGKRPR
0201: LAPGADGGPR PDSRRRPMLP PPSRGWDERR GRRDFVDRPR KRDRDRDSNP AHRREARGFW ERDRGGKMVF RPGTWEQESE REGKRARTQN GGSMEKNADA
0301: DKAASAHKEK PLAEEQARHY QLEVLEQAKS RNTIAFLETG AGKTLIAVLL IKSICDKMMK ENRKILAVFL VPKVPLVYQQ AEVIRERTGY RVGHYCGEMG
0401: QDFWDARKWQ REFDSKQVLV MTAQILLNIL RHSIIKMDAI HLLILDECHH AVKKHPYSLV MSEFYHTTPK DKRPVVFGMT ASPVNLKGVT SQEDCAIKIR
0501: NLESKLDSVV CTIKDRKELE KHVPMPSEVV VQYDKAATLC SLHEQIKQME AAVEEAALCS SKRTKWQFMG ARDAGSRDEL RLVYGVSERT ESDGAANLIQ
0601: KLRAINYALG ELGQWCAYKV AQSFLTVLQN DERANYQVDV KFQESHLKKV VDLLHCQLTE GAAVKSETND VEMHNTENHN PSELEDGELP DSHAVSVGEH
0701: VDEVIGAAVA DGKVTPRVQA LIKILLKYQH TEDFRAIIFV ERVVTALVLP KVLAELPSLG FIRCASLIGH NNNQEMRTSQ MQDTIAKFRD GRVTLLVATS
0801: VAEEGLDIRQ CNVVIRFDLA KTVLAYVQSR GRARKPGSDY ILMVERGNLA HETFLRNARN SEETLRKEAI ERTDLSHLDG TLLNSIHIPP DSMYQVESTG
0901: AVVSLNSAVG LVHLYCSQLP SDRYSILRPE FIMQKHEKPG GSMEYSCKLQ LPCNAPFEKL EGPICGSIRL AQQAVCLAAC KKLHEMSAFT DMLLPDRGSG
1001: EGEKTEKNEG DPLPGTARHR EFYPEGVAEI LRGEWILCGR DGCQSTQFIK LYMYSVNCVD VGTSKDPSLA QISNFSIIFG SELDAEVCSI IWNILKLEYN
1101: VVGSPFFLSD FQVLSTPMDL FVARTMITKA SLVFRGPIEV TESQLVLLKS FHVRLMSIVL DVDVDPSTTP WDPAKAYLFV PVGAEKCAGA LREIDWTLIN
1201: NIVNTDAWNN PLQKARPDVY LGTNERTLGG DKREYGFGKL RNGTAFGQKA HPTYGIRGAI ADFDIVKASG LVPSRDRGYS SDYQNQGKLF MADSCWDAKD
1301: LSGMVVTAAH SGKRFYVDCI CYNMNAENSF PRKEGYLGPL EYSSYADYYK QKYGVELVYK KQPLIRARGV SYCKNLLSPR FEHSEAREGD FSENVDKTYY
1401: VYLPPELCLV HPLPGSLIRG AQRLPSIMRR VESMLLAVQL KETIDYPVPA VKILEALTAA SCQETFCYER AELLGDAYLK WVVSRFLFLK YPQKHEGQLT
1501: RMRQQMVSNM VLYQFALNKT LQSFIQADRF APSRWAAPGV LPVFDEETRE SEPSIFGGES IPGNELQKDY DDDYTDSIQE EGEIDGDSSC YRVLSSKTLA
1601: DVVEALIGVY YVAGGKIAAN HLMKWIGIHA ELDPQEIPPP KPYNIPESIL KGIDFETLEG ILGTKFQNKG FLIEAITHAS RPSSGVSCYQ RLEFVGDAVL
1701: DHLITKHLFF TYTDLPPGRL TDLRAAAVNN ENFARVAVRR KLHGHLRHGS SALETQIREF VKDVRKEISK SGFNSFGLGD CKAPKVLGDI IESIAGAVFL
1801: DSGYDTSAVW KVFQPLLEPL VTPETLPMHP IRELQERCQQ QAEGLEYKAS RAGNVATVEV FVDGVQIGVA QNPQKKMAQK LAARNALVVL KEKETAAKKE
1901: TEKDGDKSNA GFTRQTLNDT CLRRQWPMPQ YRCINEGGPA HAKRFVYAVR VNTSDRGWTD ECVGEPMPSV KKAKDSAAML LLELLNRSFP DKPGGKK
0101: APQPPPVAPP QPPAERVQEA AAIAAVANNA VAVVCSEQRS QAGGPRNEAR SVEARKETRS VGPRKETTSA EPRKETRRET QGGSANGGRG GEWRDGKRPR
0201: LAPGADGGPR PDSRRRPMLP PPSRGWDERR GRRDFVDRPR KRDRDRDSNP AHRREARGFW ERDRGGKMVF RPGTWEQESE REGKRARTQN GGSMEKNADA
0301: DKAASAHKEK PLAEEQARHY QLEVLEQAKS RNTIAFLETG AGKTLIAVLL IKSICDKMMK ENRKILAVFL VPKVPLVYQQ AEVIRERTGY RVGHYCGEMG
0401: QDFWDARKWQ REFDSKQVLV MTAQILLNIL RHSIIKMDAI HLLILDECHH AVKKHPYSLV MSEFYHTTPK DKRPVVFGMT ASPVNLKGVT SQEDCAIKIR
0501: NLESKLDSVV CTIKDRKELE KHVPMPSEVV VQYDKAATLC SLHEQIKQME AAVEEAALCS SKRTKWQFMG ARDAGSRDEL RLVYGVSERT ESDGAANLIQ
0601: KLRAINYALG ELGQWCAYKV AQSFLTVLQN DERANYQVDV KFQESHLKKV VDLLHCQLTE GAAVKSETND VEMHNTENHN PSELEDGELP DSHAVSVGEH
0701: VDEVIGAAVA DGKVTPRVQA LIKILLKYQH TEDFRAIIFV ERVVTALVLP KVLAELPSLG FIRCASLIGH NNNQEMRTSQ MQDTIAKFRD GRVTLLVATS
0801: VAEEGLDIRQ CNVVIRFDLA KTVLAYVQSR GRARKPGSDY ILMVERGNLA HETFLRNARN SEETLRKEAI ERTDLSHLDG TLLNSIHIPP DSMYQVESTG
0901: AVVSLNSAVG LVHLYCSQLP SDRYSILRPE FIMQKHEKPG GSMEYSCKLQ LPCNAPFEKL EGPICGSIRL AQQAVCLAAC KKLHEMSAFT DMLLPDRGSG
1001: EGEKTEKNEG DPLPGTARHR EFYPEGVAEI LRGEWILCGR DGCQSTQFIK LYMYSVNCVD VGTSKDPSLA QISNFSIIFG SELDAEVCSI IWNILKLEYN
1101: VVGSPFFLSD FQVLSTPMDL FVARTMITKA SLVFRGPIEV TESQLVLLKS FHVRLMSIVL DVDVDPSTTP WDPAKAYLFV PVGAEKCAGA LREIDWTLIN
1201: NIVNTDAWNN PLQKARPDVY LGTNERTLGG DKREYGFGKL RNGTAFGQKA HPTYGIRGAI ADFDIVKASG LVPSRDRGYS SDYQNQGKLF MADSCWDAKD
1301: LSGMVVTAAH SGKRFYVDCI CYNMNAENSF PRKEGYLGPL EYSSYADYYK QKYGVELVYK KQPLIRARGV SYCKNLLSPR FEHSEAREGD FSENVDKTYY
1401: VYLPPELCLV HPLPGSLIRG AQRLPSIMRR VESMLLAVQL KETIDYPVPA VKILEALTAA SCQETFCYER AELLGDAYLK WVVSRFLFLK YPQKHEGQLT
1501: RMRQQMVSNM VLYQFALNKT LQSFIQADRF APSRWAAPGV LPVFDEETRE SEPSIFGGES IPGNELQKDY DDDYTDSIQE EGEIDGDSSC YRVLSSKTLA
1601: DVVEALIGVY YVAGGKIAAN HLMKWIGIHA ELDPQEIPPP KPYNIPESIL KGIDFETLEG ILGTKFQNKG FLIEAITHAS RPSSGVSCYQ RLEFVGDAVL
1701: DHLITKHLFF TYTDLPPGRL TDLRAAAVNN ENFARVAVRR KLHGHLRHGS SALETQIREF VKDVRKEISK SGFNSFGLGD CKAPKVLGDI IESIAGAVFL
1801: DSGYDTSAVW KVFQPLLEPL VTPETLPMHP IRELQERCQQ QAEGLEYKAS RAGNVATVEV FVDGVQIGVA QNPQKKMAQK LAARNALVVL KEKETAAKKE
1901: TEKDGDKSNA GFTRQTLNDT CLRRQWPMPQ YRCINEGGPA HAKRFVYAVR VNTSDRGWTD ECVGEPMPSV KKAKDSAAML LLELLNRSFP DKPGGKK
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.