Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 96.86 | 96.42 |
TraesCS4D01G342300.1 | Wheat | mitochondrion | 97.52 | 95.01 |
HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 94.73 | 93.54 |
Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 83.37 | 87.31 |
KXG40313 | Sorghum | cytosol, nucleus, plastid | 84.63 | 86.52 |
Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 84.43 | 86.22 |
GSMUA_Achr8P12350_001 | Banana | nucleus | 69.17 | 75.03 |
KRG97266 | Soybean | cytosol, nucleus, plastid | 70.99 | 71.98 |
KRH68982 | Soybean | cytosol, nucleus, plastid | 70.64 | 71.55 |
VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 70.59 | 71.46 |
Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 66.13 | 70.64 |
CDY15207 | Canola | nucleus | 64.66 | 70.48 |
CDX90002 | Canola | nucleus | 64.66 | 70.36 |
AT1G01040.2 | Thale cress | nucleus | 67.8 | 70.0 |
Solyc10g005130.2.1 | Tomato | nucleus | 66.38 | 69.33 |
PGSC0003DMT400029301 | Potato | nucleus | 67.24 | 69.28 |
TraesCS7A01G512700.1 | Wheat | mitochondrion | 6.39 | 34.71 |
TraesCS7A01G336500.1 | Wheat | cytosol | 5.48 | 34.62 |
TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 6.49 | 34.5 |
TraesCS7A01G513500.1 | Wheat | nucleus | 5.43 | 33.75 |
TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 22.57 | 31.81 |
TraesCS1A01G160900.1 | Wheat | nucleus | 26.17 | 31.71 |
TraesCS3A01G415400.2 | Wheat | nucleus | 25.71 | 30.21 |
TraesCS2A01G364700.2 | Wheat | cytosol | 23.78 | 28.9 |
Protein Annotations
Gene3D:1.10.1520.10 | MapMan:16.10.2.1.1 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016075 | GO:GO:0016787 |
GO:GO:0016891 | GO:GO:0019538 | GO:GO:0035196 | GO:GO:0040029 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd |
InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 |
InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | HAMAP:MF_00104 | InterPro:P-loop_NTPase | InterPro:PAZ_dom |
InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | PFAM:PF04851 |
PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 |
PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF44 | InterPro:RNase_III | InterPro:RNase_III_dom |
InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 |
SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS5A01G516000 | EnsemblPlants:TraesCS5A01G516000.1 |
TIGR:cd00046 | TIGR:cd00048 | TIGR:cd00079 | TIGR:cd00593 | TIGR:cd02844 | InterPro:dsRBD_dom |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:679655952..679666072
Molecular Weight (calculated)
219894.0 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.400
Length
1972 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGGGGGGAH PGAVSYWYDA CEDEDDPSLL FDFAASADFD PGLMSAMDSG SGIDFAPGLV PLPSMDCGID FASADFDPGL LPAMDCGVED GLVDEIDLIL
0101: ESINDESTPA PAPQPPPSQP VVPPPPAERV QETAAASVAD NAVAVVGSGQ RSQAVEPRRE TRSVEPRKET RSVDPRREPR RESHGGSTNG GRAGEWRDGK
0201: RPRLAPGAHG EPRPDSRRRP MLPPPSRGWE ERRGRRDFVD RPRKRDRDSN PAHRREARGF WERDRGGKMV FRPGTWEQES EREGKRARTQ NGGSVEKNAE
0301: ADKAASAQKE KPLAEEQARH YQLEVLEQAK SRNTIAFLET GAGKTLIAVL LIKSICDKMM KENRKILAVF LVPKVPLVYQ QAEVIRERTG YRVGHYCGEM
0401: GQDFWDARKW QREFDSKQVL VMTAQILLNI LRHSIIKMDA IHLLILDECH HAVKKHPYSL VMSEFYHTTP KDKRPVVFGM TASPVNLKGV TSQEDCAIKI
0501: RNLESKLDSI VCTIKDRKEL EKHVPMPFEV VVQYDKAATL CSLHEQIKQM EVAVEEAALC SSKRTKWQFM GARDAGSRDE LRLVYGVSER TESDGAANLI
0601: QKLRAINYAL GELGQWCAYK VAVSFLTVLQ NDERANYQVD VKFQESHLKK VVALLHCQLT EGAAVKSETN DVEMHNSENH NPSELEDGEL PDSHAVSVGE
0701: HVDEVIGAAV ADGKVTPRVQ ALIKILLKYQ HTEDFRAIIF VERVVTALVL PKVLAELPSL SFIRCASLIG HNNNQEMRTS QMQDTIAKFR DGRVTLLVAT
0801: SVAEEGLDIR QCNVVIRFDL AKTVLAYVQS RGRARKPGSD YILMVERGNL AHETFLRNAR NSEETLRKEA IERTDLSHLD GTLLNSIDTS PDSMYQVEST
0901: GAVVSLNSAV GLVHFYCSQL PSDRYSILHP EFIMQKHEKP GGSMEYSCKL QLPCNAPFEK LEGPICGSIR LAQQAVCLAA CKKLHEMNAF TDMLLPDRGS
1001: GEGEKTEQNE GDPLPGTARH REFYPEGVAE ILRGEWILCG RDGCQSTQFV KLYMYSVNCV DVGTSKDPSL AQLSNFSIIF GSELDAEVLS TPMDLFVART
1101: MITKASLVFR GPIEVTESQL VLLKSFHVRL MSIVLDVDVD PSTTPWDPAK AYLFVPVGAE KCTDALREID WTLVNSIVNT DAWNNPLQKA RPDVYLGTNE
1201: RTLGGEKREY GFGKLRNGTA FGQKAHPTYG IRGAIADFDI VKASGLVPSR DRGYSSEYQN QGKLFMADSC WDAKDLSGMV VTAAHSGKRF YVDCICYNMN
1301: AENSFPRKEG YLGPLEYSSY ADYYKQKYGV ELVYKKQPLI RARGVSYCKN LLSPRFEHSE AREGDFSENV DKTYYVYLPP ELCLVHPLPG SLIRGAQRLP
1401: SIMRRVESML LAVQLKETID YPVPAVKILE ALTAASCQET FCYERAELLG DAYLKWVVSR FLFLKYPQKH EGQLTRMRQQ MVSNMVLYQF ALNKTLQSYI
1501: QADRFAPSRW AAPGVLPVFD EETRESEPSI FGEESIPGNE LQKDYDDDYT DNIQEEGEID GDSSCYRVLS SKTLADVVEA LIGVYYVAGG KIAANHLMKW
1601: IGIHAELDPQ EIPPPKPYNI PESILKGIEF ETLEGILGMK FQNKGFLIEA ITHASRPSSG VSCYQRLEFV GDAVLDHLIT KHLFFTYTDL PPGRLTDLRA
1701: AAVNNENFAR VAVRRKLHTH LRHGSSALEK QIREFVKDVR EEISKSGFNS FGLGDCKAPK VLGDIIESIA GAVFLDSGYD TSAVWKVFQP LLEPLVTPET
1801: LPMHPIRELQ ERCQQQAEGL EYKASRAGNV ATVEVFVDGV QIGVAQNPQK KMAQKLAARN ALVVLKEKET AAKKETEKAG DKSNAGFTRQ NLNDTCLKRQ
1901: WPMPQYRCIN EGGPAHAKRF VYAVRVNTSD RGWTDECIGE PMPSVKKAKD SAAMLLLELL NRSFPDKPDG KK
0101: ESINDESTPA PAPQPPPSQP VVPPPPAERV QETAAASVAD NAVAVVGSGQ RSQAVEPRRE TRSVEPRKET RSVDPRREPR RESHGGSTNG GRAGEWRDGK
0201: RPRLAPGAHG EPRPDSRRRP MLPPPSRGWE ERRGRRDFVD RPRKRDRDSN PAHRREARGF WERDRGGKMV FRPGTWEQES EREGKRARTQ NGGSVEKNAE
0301: ADKAASAQKE KPLAEEQARH YQLEVLEQAK SRNTIAFLET GAGKTLIAVL LIKSICDKMM KENRKILAVF LVPKVPLVYQ QAEVIRERTG YRVGHYCGEM
0401: GQDFWDARKW QREFDSKQVL VMTAQILLNI LRHSIIKMDA IHLLILDECH HAVKKHPYSL VMSEFYHTTP KDKRPVVFGM TASPVNLKGV TSQEDCAIKI
0501: RNLESKLDSI VCTIKDRKEL EKHVPMPFEV VVQYDKAATL CSLHEQIKQM EVAVEEAALC SSKRTKWQFM GARDAGSRDE LRLVYGVSER TESDGAANLI
0601: QKLRAINYAL GELGQWCAYK VAVSFLTVLQ NDERANYQVD VKFQESHLKK VVALLHCQLT EGAAVKSETN DVEMHNSENH NPSELEDGEL PDSHAVSVGE
0701: HVDEVIGAAV ADGKVTPRVQ ALIKILLKYQ HTEDFRAIIF VERVVTALVL PKVLAELPSL SFIRCASLIG HNNNQEMRTS QMQDTIAKFR DGRVTLLVAT
0801: SVAEEGLDIR QCNVVIRFDL AKTVLAYVQS RGRARKPGSD YILMVERGNL AHETFLRNAR NSEETLRKEA IERTDLSHLD GTLLNSIDTS PDSMYQVEST
0901: GAVVSLNSAV GLVHFYCSQL PSDRYSILHP EFIMQKHEKP GGSMEYSCKL QLPCNAPFEK LEGPICGSIR LAQQAVCLAA CKKLHEMNAF TDMLLPDRGS
1001: GEGEKTEQNE GDPLPGTARH REFYPEGVAE ILRGEWILCG RDGCQSTQFV KLYMYSVNCV DVGTSKDPSL AQLSNFSIIF GSELDAEVLS TPMDLFVART
1101: MITKASLVFR GPIEVTESQL VLLKSFHVRL MSIVLDVDVD PSTTPWDPAK AYLFVPVGAE KCTDALREID WTLVNSIVNT DAWNNPLQKA RPDVYLGTNE
1201: RTLGGEKREY GFGKLRNGTA FGQKAHPTYG IRGAIADFDI VKASGLVPSR DRGYSSEYQN QGKLFMADSC WDAKDLSGMV VTAAHSGKRF YVDCICYNMN
1301: AENSFPRKEG YLGPLEYSSY ADYYKQKYGV ELVYKKQPLI RARGVSYCKN LLSPRFEHSE AREGDFSENV DKTYYVYLPP ELCLVHPLPG SLIRGAQRLP
1401: SIMRRVESML LAVQLKETID YPVPAVKILE ALTAASCQET FCYERAELLG DAYLKWVVSR FLFLKYPQKH EGQLTRMRQQ MVSNMVLYQF ALNKTLQSYI
1501: QADRFAPSRW AAPGVLPVFD EETRESEPSI FGEESIPGNE LQKDYDDDYT DNIQEEGEID GDSSCYRVLS SKTLADVVEA LIGVYYVAGG KIAANHLMKW
1601: IGIHAELDPQ EIPPPKPYNI PESILKGIEF ETLEGILGMK FQNKGFLIEA ITHASRPSSG VSCYQRLEFV GDAVLDHLIT KHLFFTYTDL PPGRLTDLRA
1701: AAVNNENFAR VAVRRKLHTH LRHGSSALEK QIREFVKDVR EEISKSGFNS FGLGDCKAPK VLGDIIESIA GAVFLDSGYD TSAVWKVFQP LLEPLVTPET
1801: LPMHPIRELQ ERCQQQAEGL EYKASRAGNV ATVEVFVDGV QIGVAQNPQK KMAQKLAARN ALVVLKEKET AAKKETEKAG DKSNAGFTRQ NLNDTCLKRQ
1901: WPMPQYRCIN EGGPAHAKRF VYAVRVNTSD RGWTDECIGE PMPSVKKAKD SAAMLLLELL NRSFPDKPDG KK
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.