Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 96.42 | 96.86 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 97.02 | 94.96 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 94.6 | 93.84 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 82.79 | 87.1 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 84.3 | 86.57 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 84.05 | 86.22 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 68.5 | 74.64 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 70.87 | 72.19 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 70.42 | 71.65 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 70.32 | 71.51 |
| Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 66.08 | 70.91 |
| CDY15207 | Canola | nucleus | 64.61 | 70.76 |
| CDX90002 | Canola | nucleus | 64.61 | 70.64 |
| AT1G01040.2 | Thale cress | nucleus | 67.74 | 70.26 |
| Solyc10g005130.2.1 | Tomato | nucleus | 66.08 | 69.33 |
| PGSC0003DMT400029301 | Potato | nucleus | 66.99 | 69.33 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 5.3 | 33.98 |
| TraesCS7B01G428200.1 | Wheat | mitochondrion | 6.21 | 33.7 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 6.21 | 32.89 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 21.4 | 31.38 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 25.44 | 30.05 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 15.7 | 30.02 |
| TraesCS2B01G383300.2 | Wheat | plastid | 23.52 | 27.11 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:16.10.2.1.1 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0019538 | GO:GO:0035196 |
| GO:GO:0040029 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | PFAM:PF04851 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF44 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS4B01G347300 |
| EnsemblPlants:TraesCS4B01G347300.1 | TIGR:cd00046 | TIGR:cd00048 | TIGR:cd00079 | TIGR:cd00593 | TIGR:cd02844 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:641259115..641269961
Molecular Weight (calculated)
221160.0 Da
IEP (calculated)
6.320
GRAVY (calculated)
-0.406
Length
1981 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGGGEQPGA VSYWYDACED EDDPSLLFDF AASADFGPGL MPVMDSSGIN FAASAGFDPA AMGCGIDFAS ADFDPGLLPA MDCGVEDGLV DEIDRILESI
0101: NDESAPAPAP QPPPPSQPVA PQPPAERAQE AAAAAVANNA VAVVGSGQRS QAVEPRRETR SVEPRKEIRS LDPKETRSLD PRKETRRESY GGSMNGGRGG
0201: EWRDGKRPRL APGAHGEPRP DSRRRPMLPP PSRGWEERRG RRDFVDRPRK RDRDSNPAHR REARGFWERD RGGKMVFRPG TWEQESEREG KRARTHNGGS
0301: VEKTAEADKA ASAQKEKPLA EEQARHYQLE VLEQAKSRNT IAFLETGAGK TLIAVLLIKS ICDKMMKENR KILAVFLVPK VPLVYQQAEV IRERTGYRVG
0401: HYCGEMGQDF WDARKWQREF DSKQVLVMTA QILLNILRHS IIKMDAIHLL ILDECHHAVK KHPYSLVMSE FYHTTPKDKR PVVFGMTASP VNLKGVTSQE
0501: DCAIKIRNLE SKLDSIVCTI KDRKELEKHV PMPFEVVVQY DKAATLCSLH EQIKQMEAAV EEAALCSSKR TKWQFMGARD AGSRDELRLV YGVSERTESD
0601: GAANLIQKLR AINYALGELG QWCAYKVAQS FLTVLQNDER ANYQVDVKFQ ESHLKKVVDL LHCQLTEGAA VKSETNDVEM HNTENHNPSE LEDGELPDSH
0701: AVSVGEHVDE VIGAAVADGK VTPRVQALIK ILLKYQHTDD FRAIIFVERV VTALVLPKVL AELPSLSFIR CASLIGHNNN QEMRTSQMQD TIAKFRDGRV
0801: TLLVATSVAE EGLDIRQCNV VIRFDLAKTV LAYVQSRGRA RKPGSDYILM VERENLAHET FLRNARNSEE TLRKEAIERT DLSHLDGTLL NSIDTSPDSM
0901: YQVESTGAVV SLNSAVGLVH FYCSQLPSDR YSILRPEFIM QKHEKPGGSM EYSCKLQLPC NAPFEKLEGP ICGSIRLAQQ AVCLAACKKL HEMNAFTDML
1001: LPDRGSGEGE KTEQNEGDPL PGTARHREFY PEGVAEILRG EWILCGRDGC QSTQFIKLYM YSVNCVDVGA SKDPFLAQLS NFSIIFGSEL DAEVLSTPMD
1101: LFVARTMITK ASLVFRGPIE VTESQLVLLK SFHVRLMSIV LDVDVDPSTT PWDPAKAYLF VPVGTEKCTD ALREIDWTLV NSIVNTDAWN NPLQKARPDV
1201: YLGTNERTLG GDKREYGFGK LRNGTAFGQK AHPTYGIRGA IADFDIVKAS GLVPSRDRGY SSDYQNQGKL FMADSCWDAK DLSGMVVTAA HSGKRFYVDC
1301: ICYNMNAENS FPRKEGYLGP LEYSSYADYY KQKYGVELVY KKQPLIRARG VSYCKNLLSP RFEHSEAREG DFSENVDKTY YVYLPPELCL VHPLPGSLIR
1401: GAQRLPSIMR RVESMLLAVQ LKETIDYPVP AVKILEALTA ASCQETFCYE RAELLGDAYL KWVVSRFLFL KYPQKHEGQL TRMRQQMVSN MVLYQFALNK
1501: TLQSYIQADR FAPSRWAAPG VLPVFDEETR ESEPSIFGEG SIPGNEVQKD YDDDYTDSIQ EEGEIDGDSS CYRVLSSKTL ADVVEALIGV YYVAGGKIAA
1601: NHLMKWIGIH AELDPQEIPP PKPYNIPESI LKGIDFETLE GILGMKFQNK GFIIEAITHA SRPSSGVSCY QRLEFVGDAV LDHLITKHLF FTYTDLPPGR
1701: LTDLRAAAVN NENFARVAVR RKLHGHLRHG SSALEKQIRE FVKDVREEIS KSGFNSFGLG DCKAPKVLGD IIESIAGAVF LDSGYDTSAV WKVFQPLLEP
1801: LVTPETLPMH PIRELQERCQ QQAEGLEYKA SRAGNVATVE VFVDGVQIGV AQNPQKKMAQ KLAARNALVV LKEKETAAKK ETEKDGDKNN AGFTRQTLND
1901: TCLRRQWPMP QYRCINEGGP AHAKRFVYAV RVNTSDRGWT DECVGEPMPS VKKAKDSAAM LLLELLNRSF PEKPDASTYV W
0101: NDESAPAPAP QPPPPSQPVA PQPPAERAQE AAAAAVANNA VAVVGSGQRS QAVEPRRETR SVEPRKEIRS LDPKETRSLD PRKETRRESY GGSMNGGRGG
0201: EWRDGKRPRL APGAHGEPRP DSRRRPMLPP PSRGWEERRG RRDFVDRPRK RDRDSNPAHR REARGFWERD RGGKMVFRPG TWEQESEREG KRARTHNGGS
0301: VEKTAEADKA ASAQKEKPLA EEQARHYQLE VLEQAKSRNT IAFLETGAGK TLIAVLLIKS ICDKMMKENR KILAVFLVPK VPLVYQQAEV IRERTGYRVG
0401: HYCGEMGQDF WDARKWQREF DSKQVLVMTA QILLNILRHS IIKMDAIHLL ILDECHHAVK KHPYSLVMSE FYHTTPKDKR PVVFGMTASP VNLKGVTSQE
0501: DCAIKIRNLE SKLDSIVCTI KDRKELEKHV PMPFEVVVQY DKAATLCSLH EQIKQMEAAV EEAALCSSKR TKWQFMGARD AGSRDELRLV YGVSERTESD
0601: GAANLIQKLR AINYALGELG QWCAYKVAQS FLTVLQNDER ANYQVDVKFQ ESHLKKVVDL LHCQLTEGAA VKSETNDVEM HNTENHNPSE LEDGELPDSH
0701: AVSVGEHVDE VIGAAVADGK VTPRVQALIK ILLKYQHTDD FRAIIFVERV VTALVLPKVL AELPSLSFIR CASLIGHNNN QEMRTSQMQD TIAKFRDGRV
0801: TLLVATSVAE EGLDIRQCNV VIRFDLAKTV LAYVQSRGRA RKPGSDYILM VERENLAHET FLRNARNSEE TLRKEAIERT DLSHLDGTLL NSIDTSPDSM
0901: YQVESTGAVV SLNSAVGLVH FYCSQLPSDR YSILRPEFIM QKHEKPGGSM EYSCKLQLPC NAPFEKLEGP ICGSIRLAQQ AVCLAACKKL HEMNAFTDML
1001: LPDRGSGEGE KTEQNEGDPL PGTARHREFY PEGVAEILRG EWILCGRDGC QSTQFIKLYM YSVNCVDVGA SKDPFLAQLS NFSIIFGSEL DAEVLSTPMD
1101: LFVARTMITK ASLVFRGPIE VTESQLVLLK SFHVRLMSIV LDVDVDPSTT PWDPAKAYLF VPVGTEKCTD ALREIDWTLV NSIVNTDAWN NPLQKARPDV
1201: YLGTNERTLG GDKREYGFGK LRNGTAFGQK AHPTYGIRGA IADFDIVKAS GLVPSRDRGY SSDYQNQGKL FMADSCWDAK DLSGMVVTAA HSGKRFYVDC
1301: ICYNMNAENS FPRKEGYLGP LEYSSYADYY KQKYGVELVY KKQPLIRARG VSYCKNLLSP RFEHSEAREG DFSENVDKTY YVYLPPELCL VHPLPGSLIR
1401: GAQRLPSIMR RVESMLLAVQ LKETIDYPVP AVKILEALTA ASCQETFCYE RAELLGDAYL KWVVSRFLFL KYPQKHEGQL TRMRQQMVSN MVLYQFALNK
1501: TLQSYIQADR FAPSRWAAPG VLPVFDEETR ESEPSIFGEG SIPGNEVQKD YDDDYTDSIQ EEGEIDGDSS CYRVLSSKTL ADVVEALIGV YYVAGGKIAA
1601: NHLMKWIGIH AELDPQEIPP PKPYNIPESI LKGIDFETLE GILGMKFQNK GFIIEAITHA SRPSSGVSCY QRLEFVGDAV LDHLITKHLF FTYTDLPPGR
1701: LTDLRAAAVN NENFARVAVR RKLHGHLRHG SSALEKQIRE FVKDVREEIS KSGFNSFGLG DCKAPKVLGD IIESIAGAVF LDSGYDTSAV WKVFQPLLEP
1801: LVTPETLPMH PIRELQERCQ QQAEGLEYKA SRAGNVATVE VFVDGVQIGV AQNPQKKMAQ KLAARNALVV LKEKETAAKK ETEKDGDKNN AGFTRQTLND
1901: TCLRRQWPMP QYRCINEGGP AHAKRFVYAV RVNTSDRGWT DECVGEPMPS VKKAKDSAAM LLLELLNRSF PEKPDASTYV W
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.