Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G160900.1 | Wheat | nucleus | 97.68 | 62.2 |
TraesCS1D01G158000.2 | Wheat | nucleus | 97.3 | 61.92 |
HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 95.66 | 58.88 |
OQU91611 | Sorghum | nucleus, plastid | 82.14 | 51.99 |
Os10t0485600-01 | Rice | cytosol, plastid | 81.18 | 51.37 |
Zm00001d032655_P006 | Maize | nucleus | 74.9 | 49.43 |
KRH52276 | Soybean | cytosol | 19.02 | 39.16 |
GSMUA_Achr5P10880_001 | Banana | cytosol | 58.11 | 37.67 |
Solyc08g067210.2.1 | Tomato | nucleus | 49.23 | 35.66 |
CDY30942 | Canola | nucleus | 41.12 | 33.78 |
TraesCS7B01G248100.1 | Wheat | cytosol | 9.17 | 30.74 |
KRH61605 | Soybean | nucleus | 48.17 | 29.81 |
Bra019456.1-P | Field mustard | nucleus | 41.12 | 29.44 |
AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 42.95 | 28.16 |
VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 52.41 | 27.95 |
CDY21223 | Canola | nucleus | 41.12 | 27.82 |
TraesCS7B01G428200.1 | Wheat | mitochondrion | 9.75 | 27.67 |
TraesCS3B01G450600.3 | Wheat | nucleus | 44.69 | 27.61 |
TraesCS7B01G430900.2 | Wheat | mitochondrion | 9.94 | 27.54 |
TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 22.49 | 17.25 |
TraesCS2B01G383300.2 | Wheat | plastid | 26.54 | 16.0 |
TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 30.02 | 15.7 |
Protein Annotations
Gene3D:1.10.1520.10 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | InterPro:Dicer_dimer_sf |
InterPro:Dicer_dimerisation_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016787 | GO:GO:0016891 | InterPro:IPR000999 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014720 |
InterPro:IPR036389 | InterPro:IPR038248 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 | PFAM:PF00636 |
PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51327 |
PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 | SMART:SM00949 |
SUPFAM:SSF101690 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS1B01G177600 | EnsemblPlants:TraesCS1B01G177600.1 | TIGR:cd00593 |
InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:322403161..322415820
Molecular Weight (calculated)
116972.0 Da
IEP (calculated)
7.167
GRAVY (calculated)
-0.118
Length
1036 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPKPSFAVAI EDGSYQCTLT LPPNAAFQRI VGPLCSTSNL AKQLVSLDAC KKLHHLGELN DHLLPFTEEP IDIDVALRDG KFLSGPGTTK RKELHGTRNV
0101: LALSGSWIHE SGSVTLNAYR FGFLCDQEGE NYAGFVLLME SALDDDVAYS KMDLFLIPNK MVYTTVTPCG KVQLDKKQLR DGKLFQEFFF NGIFGRLFHG
0201: SRTSGVQREF LFRKGHEIQW SSESMYLLLP LRHSPHIQQD LNIYWEAVES CTQAVERLRN LYLEEENIRA NFIQHRSIKE KDIIHLANKS LHFSSIKDSV
0301: VLSLHTGRIY SVLDLIYDIT AEDAFEEMYN GKASPFSSFV DYYREKYGIV IQHPKQPLLL LKQSHNAHNL LFSKSKYIDG STGDPLLMEK EQIHARVPPE
0401: LLIHIDVTIE VLKSFYLLPS VMHRLQSLML ASQLRRDIGY TQHIPSYLIL EAITTLRCCE TFSLERLELL GDSVLKYVIG CDLFLRYPMK HEGHLSDMRS
0501: NAVCNATLHK HGIWRSLQGY VRDSAFDPRR WVAPGQISLR PFPCNCGIET AFVPTNGRYI SDDPSFVVGK PCDRAHRWMC SKAISDCVEA LVGAYYVGGG
0601: IVAALWVMKW FGIEIKCDRT LVQEVKLNAS YICYLPKISV IEELEAKLKY NFSVKGLLLE AITHPSLQEL GVDYCYQRLE FLGDSVLDLL ITRYLYVTHT
0701: DVDPGELTDL RSALVSNENF AEVVLRNNIH SHLQHGSGIL LEQITEYVRS NLECQGKVNK FLQHATCKAP KVLGDIMESI AGAIFVDADF NVDVVWKIVE
0801: PLLSPMITPD NLALPPYREL LELCSHLGYF INSKCSSKGE ELSIEMSVQL RDELLIAQGQ DRNKKSAKAK AAARILADLK KRGLSMKQCS SKAKQLDIIS
0901: SEQYPLASLE SPLDYCHVNA NPSLGGLPSL KEAVVLRLKM DKGGPRSALF KLCKRLPWPM PEFEFVEQRF RTPIVLDGVT TTNFNSFVST ITLHIPDVTA
1001: ITLQGERRTD KRSSQDSASL AMLHKLQELK VCICKT
0101: LALSGSWIHE SGSVTLNAYR FGFLCDQEGE NYAGFVLLME SALDDDVAYS KMDLFLIPNK MVYTTVTPCG KVQLDKKQLR DGKLFQEFFF NGIFGRLFHG
0201: SRTSGVQREF LFRKGHEIQW SSESMYLLLP LRHSPHIQQD LNIYWEAVES CTQAVERLRN LYLEEENIRA NFIQHRSIKE KDIIHLANKS LHFSSIKDSV
0301: VLSLHTGRIY SVLDLIYDIT AEDAFEEMYN GKASPFSSFV DYYREKYGIV IQHPKQPLLL LKQSHNAHNL LFSKSKYIDG STGDPLLMEK EQIHARVPPE
0401: LLIHIDVTIE VLKSFYLLPS VMHRLQSLML ASQLRRDIGY TQHIPSYLIL EAITTLRCCE TFSLERLELL GDSVLKYVIG CDLFLRYPMK HEGHLSDMRS
0501: NAVCNATLHK HGIWRSLQGY VRDSAFDPRR WVAPGQISLR PFPCNCGIET AFVPTNGRYI SDDPSFVVGK PCDRAHRWMC SKAISDCVEA LVGAYYVGGG
0601: IVAALWVMKW FGIEIKCDRT LVQEVKLNAS YICYLPKISV IEELEAKLKY NFSVKGLLLE AITHPSLQEL GVDYCYQRLE FLGDSVLDLL ITRYLYVTHT
0701: DVDPGELTDL RSALVSNENF AEVVLRNNIH SHLQHGSGIL LEQITEYVRS NLECQGKVNK FLQHATCKAP KVLGDIMESI AGAIFVDADF NVDVVWKIVE
0801: PLLSPMITPD NLALPPYREL LELCSHLGYF INSKCSSKGE ELSIEMSVQL RDELLIAQGQ DRNKKSAKAK AAARILADLK KRGLSMKQCS SKAKQLDIIS
0901: SEQYPLASLE SPLDYCHVNA NPSLGGLPSL KEAVVLRLKM DKGGPRSALF KLCKRLPWPM PEFEFVEQRF RTPIVLDGVT TTNFNSFVST ITLHIPDVTA
1001: ITLQGERRTD KRSSQDSASL AMLHKLQELK VCICKT
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.