Factsheet for GSMUA_Achr5P10880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G177600.1	Wheat	nucleus	37.67	58.11
Os10t0485600-01	Rice	cytosol, plastid	53.88	52.6
GSMUA_Achr10P...	Banana	nucleus	21.78	52.49
TraesCS1A01G160900.1	Wheat	nucleus	53.07	52.12
TraesCS1D01G158000.2	Wheat	nucleus	52.94	51.97
OQU91611	Sorghum	nucleus, plastid	53.07	51.8
Zm00001d032655_P006	Maize	nucleus	50.75	51.66
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	4.63	51.39
HORVU1Hr1G042710.5	Barley	cytosol, mitochondrion, nucleus	52.82	50.15
Solyc08g067210.2.1	Tomato	nucleus	39.99	44.69
KRH52276	Soybean	cytosol	14.02	44.53
KRH61605	Soybean	nucleus	45.99	43.91
GSMUA_Achr10P...	Banana	extracellular	5.07	43.32
GSMUA_Achr10P...	Banana	cytosol	10.89	41.13
CDY30942	Canola	nucleus	31.48	39.89
AT3G43920.2	Thale cress	cytosol, nucleus, plastid	38.61	39.05
VIT_04s0008g02170.t01	Wine grape	mitochondrion	46.25	38.03
Bra019456.1-P	Field mustard	nucleus	33.98	37.53
CDY21223	Canola	nucleus	34.86	36.38
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	6.07	28.45
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	23.22	27.22
GSMUA_Achr9P22470_001	Banana	cytosol	6.45	26.96
GSMUA_Achr2P15170_001	Banana	cytosol	5.69	26.76
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	6.57	25.8
GSMUA_Achr8P12350_001	Banana	nucleus	28.97	25.47
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	17.71	25.34

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:2.170.260.10	Gene3D:3.30.160.20	Gene3D:3.30.160.380	Gene3D:3.40.50.300	MapMan:35.1
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Dicer_dimer_sf	InterPro:Dicer_dimerisation_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0016891	GO:GO:0031047	GO:GO:0090501	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr5G10880_001
EnsemblPlants:GSMUA_Achr5P10880_001	EnsemblPlants:GSMUA_Achr5T10880_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000999	InterPro:IPR001650
InterPro:IPR003100	InterPro:IPR005034	InterPro:IPR014001	InterPro:IPR036389	InterPro:IPR038248	UniProt:M0SXG7
InterPro:P-loop_NTPase	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF00270	PFAM:PF00271	PFAM:PF00636
PFAM:PF02170	PFAM:PF03368	ScanProsite:PS00517	PFscan:PS50142	PFscan:PS50821	PFscan:PS51192
PFscan:PS51194	PFscan:PS51327	PANTHER:PTHR14950	PANTHER:PTHR14950:SF31	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00487	SMART:SM00490	SMART:SM00535	SMART:SM00949	SUPFAM:SSF101690	SUPFAM:SSF52540
SUPFAM:SSF69065	UniParc:UPI000296D803	SEG:seg	:	:	:

Description

Endoribonuclease Dicer homolog 3b [Source:GMGC_GENE;Acc:GSMUA_Achr5G10880_001]

Coordinates

chr5:-:7850534..7865689

Molecular Weight (calculated)

180685.0 Da

IEP (calculated)

7.960

GRAVY (calculated)

-0.088

Length

1598 amino acids

Sequence
(BLAST)

0001: MRKNTIAVPE TGAGKTLIAV MLMKEFGKRL IVDGQKMMII FLASTVNLVN QQYEVIQDYT ELDVVEYCGA QRIGEWSTDC WEKNVKTRDV VVMIPQILLD
0101: ALRRAFQTLD TVQLIVFDEC HCARGNHPYA RIMKEFYHDT GCKPTIFGMT ASPVGGKARY SFNDSPRLTR EQLLNKKLFH LIEVTEFVKI RFFALMVMLT
0201: RNYYYNKFTT KQIIQLLSCS TNSLLSSIHV LILQPVKVCI ENICSLNIGD CEFSKSTIQL VISFLKEALC TIEAILPCDY NELIKTEVGY AMGTKNGFIS
0301: SKLDKLVEIS QSLRLEEEVY CLILMERVIT SKVIERFMRK INITPHFPVS YLTGGGSSKD SLTPKLQRTV IDSFRAGKVN FLLTTDIAEE GVDIPNCSCV
0401: IHFDLPKTVC SYVQSRGRAR QVNSSFILML ERGNDVQKDK IFDIIGSENY LGKPSSRDNK TFLSNGHGEE IDVYCVKTTG ATVTAESSIN LIYKFCEKLP
0501: KDRYFIPKPF FELYEKDGSY ECSLTLPPNA AFQKIIGPMS CSSNSAKQLV SLKAFKKLHQ LGALSNHLLP FHEDPQGSTF SGAGKNSFIV WTTKRKELHG
0601: MTSVHALCGS WAHKPDNVTL NAYKVHFVCD QEGENYSDFV LLVGSSLDDD VASAEIVLSL IPNKVITSYV SPCGKVHLSA EQVEKSKLFQ EFFFNGIFGR
0701: MFTGSRSSGS QREFLFREGH MISWSSMNMY LLLPLESSSN DNGFSIYWNG IHACVAIVEY LRKIYSTDDE YHSGNSTTSC TSPCETNGEN AEIVQLANKS
0801: LHIKYLKNSV VFSIHNGRIY SVLDVINDVT PEDPFDDSCG MKPSQFVSFI DYYHQKYNIV LHYPQQPLLL LKQSHNPHNL LLKSRSEGFC KVRLLIFIAT
0901: IILMNLNYQL LSENLYLYGN LCHSVIWIVA DASTGDKAIM EKEQIHARLP PELLVHIDLS TDILKSFYLL PSVMHRLETL MLASQLRKEI GYNDLLIPSS
1001: LILEAMTTLR CCENFSLERL ELLGDSVLKY AVSCHLFLKY PKKHEGQLSD CRSQAVCNST LHKLGTGRSI QGYIRDSAFD PRRWLAPGQI SIRPFPCHRW
1101: MCSKTIADCV EALVGAYYAG GGLPAALQAM RWLGVDIKMD KVLVEEAKKS AFHWYHLSKV SEIEFLESKL NYMFTVKGLL LEAITHPSLQ ELGLDYCYQR
1201: LEFLGDSVLD LLITWHHFLS HKNIDPGVLT DLRSASVNNE NFAQVAVRNN FDNYLRHSSG ILSEQIKDYV TRISSYHCFN DMLLPVFLPK APKVLGDIVE
1301: SIAGAILIDT YLNLDAVWDI FKSLFSPIVT PDNLELPPIR ELSELCSYFG YFIHTKSMKN GEEVLSELTV QLKDDLLVGC GRDKNMKTAK AQAALCLLKQ
1401: LKTRGISHGQ SISKRKQDRY IFSDNSFLST TYVRNTTSKV KNNSKLTKAK LNNPGMHVWP LLLGTLVLHK VIRSCEKVPL RSQASGVEKF AMHPITLPMR
1501: MDKGGPRTAL FKLCRILQWP MPEFESREEN FRTPITLNGV KTPNFNLFTT KISLHIPNSK VLTLTGEQRT DKKSAQDSAA LVLLLELKKQ EVCILEEP

Best Arabidopsis Sequence Match ( AT3G43920.4 )
(BLAST)

0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGYELKV YEVAKNRNII AVLGTGIDKS EITKRLIKAM GSSDTDKRLI IFLAPTVNLV
0101: KQQCCEIRAL VNLKVEEYFG AKGVDKWTSQ RWDEEFSKHD VLVMTPQILL DVLRSAFLKL EMVCLLIIDE CHHTTGNHPY AKLMKEFYHE STSKPKIFGL
0201: TASAVIRKAQ VSELERLMDS KIFNPEEREG VEKFATTVKE GPILYNPSPS CSLELKEKLE TSHLKFDASL RRLQELGKDS FLNMDNKFET YQKRLSIDYR
0301: EILHCLDNLG LICAHLAAEV CLEKISDTKE ESETYKECSM VCKEFLEDIL STIGVYLPQD DKSLVDLQQN HLSAVISGHV SPKLKELFHL LDSFRGDKQK
0401: QCLILVERII TAKVIERFVK KEASLAYLNV LYLTENNPST NVSAQKMQIE IPDLFQHGKV NLLFITDVVE EGFQVPDCSC MVCFDLPKTM CSYSQSQKHA
0501: KQSNSKSIMF LERGNPKQRD HLHDLMRREV LIQDPEAPNL KSCPPPVKNG HGVKEIGSMV IPDSNITVSE EAASTQTMSD PPSRNEQLPP CKKLRLDNNL
0601: LQSNGKEKVA SSKSKSSSSA AGSKKRKELH GTTCANALSG TWGENIDGAT FQAYKFDFCC NISGEVYSSF SLLLESTLAE DVGKVEMDLY LVRKLVKASV
0701: SPCGQIRLSQ EELVKAKYFQ QFFFNGMFGK LFVGSKSQGT KREFLLQTDT SSLWHPAFMF LLLPVETNDL ASSATIDWSA INSCASIVEF LKKNSLLDLR
0801: DSDGNQCNTS SGQEVLLDDK MEETNLIHFA NASSDKNSLE ELVVIAIHTG RIYSIVEAVS DSSAMSPFEV DASSGYATYA EYFNKKYGIV LAHPNQPLMK
0901: LKQSHHAHNL LVDFNEEMVV KTEPKAGNVR KRKPNIHAHL PPELLARIDV PRAVLKSIYL LPSVMHRLES LMLASQLREE IDCSIDNFSI SSTSILEAVT
1001: TLTCPESFSM ERLELLGDSV LKYVASCHLF LKYPDKDEGQ LSRQRQSIIS NSNLHRLTTS RKLQGYIRNG AFEPRRWTAP GQFSLFPVPC KCGIDTREVP
1101: LDPKFFTENM TIKIGKSCDM GHRWVVSKSV SDCAEALIGA YYVSGGLSAS LHMMKWLGID VDFDPNLVVE AINRVSLRCY IPKEDELIEL ERKIQHEFSA
1201: KFLLKEAITH SSLRESYSYE RLEFLGDSVL DFLITRHLFN TYEQTGPGEM TDLRSACVNN ENFAQVAVKN NLHTHLQRCA TVLETQINDY LMSFQKPDET
1301: GRSIPSIQGP KALGDVVESI AGALLIDTRL DLDQVWRVFE PLLSPLVTPD KLQLPPYREL NELCDSLGYF FRVKCSNDGV KAQATIQLQL DDVLLTGDGS
1401: EQTNKLALGK AASHLLTQLE KRNISRKTSL GDNQSSMDVN LACNHSDRET LTSETTEIQS IVIPFIGPIN MKKGGPRGTL HEFCKKHLWP MPTFDTSEEK
1501: SRTPFEFIDG GEKRTSFSSF TSTITLRIPN REAVMYAGEA RPDKKSSFDS AVVELLYELE RRKIVIIQK

Arabidopsis Description

DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.