Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 33.75 | 89.13 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 10.38 | 80.56 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 25.34 | 17.71 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 4.66 | 12.87 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 15.04 | 12.33 |
| GSMUA_Achr10P... | Banana | nucleus | 6.8 | 11.46 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 16.65 | 10.23 |
| GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 2.33 | 7.62 |
| GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 2.51 | 6.88 |
| GSMUA_Achr2P15170_001 | Banana | cytosol | 1.88 | 6.18 |
| GSMUA_Achr10P... | Banana | extracellular | 0.81 | 4.81 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 1.34 | 3.93 |
Protein Annotations
| Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0016891 | GO:GO:0090502 | EnsemblPlantsGene:GSMUA_Achr10G28130_001 | EnsemblPlants:GSMUA_Achr10P28130_001 | EnsemblPlants:GSMUA_Achr10T28130_001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR038248 |
| UniProt:M0RM37 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF03368 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI000295C8B5 | SEG:seg | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G28130_001]
Coordinates
chr10:-:31043286..31056957
Molecular Weight (calculated)
112533.0 Da
IEP (calculated)
8.646
GRAVY (calculated)
-0.071
Length
1117 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDELGLVCAI EATKICIDAV SSSNSTDRRN FVMVNVAQCK SFLEEVLQKL AERLPAGQNL TVILLFHSLS FTSFSFPLFL VKTEQFYDAF LCILQLKKSY
0101: VNYAMFIWRR WTSLMKQLSI FTDCTILVHL DTGIKPHWWP YHVLLYIIHP RICIISYMKW QTLIVDRKQS QDFELLLKTE NDCAAAVQKG YISSKLYELI
0201: QIIRSLGMPS QVVCLIFVER NITAKVLERF IKNVCFLSHF TVSYLAGGSS SVDALTPKTQ KDILDSFRSG KANLLFTTDV PDCSCVIRFD LPKTARSYIQ
0301: SHGRARQAGS HYVIMLERGN LQQRDLLFDI IKNKHSTVDI ALNRDQDSLV SIVSINEDLG AYYVDSTGAS VTADSSVSLI NTYCQNLPRD KYVLHSQTNF
0401: QVHFGCGYYE CTITLPPNAA IQTIVGRANQ NSHVAKKLAC LEACKRLHQS GALNDHLLPC VQEHLDDVKA EKTGESAKGA GTTKRKELHG XXXXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0601: XXXXXXXXFP LDSSCAHKHD KVSINWKAIS ASASVVKFMR EIYSSGGHNG PVVDFKCGSS ETRGSMPEMI HLANRFAEPQ SLKGVVVLAI HTGMIYCVLD
0701: VVTGLTADSP FDGNSWKQSS DTWTFSEYFN NAHTPPHPPR CHHHHHLISR SALTERRRTR RHRAPPKTSL LLFAFASTIA SAAVTSSMSP SKRPIDSADG
0801: EGSPVTAKKQ KHEPEEFEPR SHQLAVYEVA LRTNTIAVLE TGSGKTMISV MLVKHFGEEL KKRGDQRLIL FLAPTVHLVV QQYETIKVHT DVDVQYCCGA
0901: KAVDAWSIAS WQKEVSTYQV MVMTPQILLD VLRKGFLNLD MVHLMVIDEC HHALGDHPYN KLMKEFYHKS VLKPHIFGMT ASPILRKGKM VRKLFHLSRI
1001: RLDSAYAVSV ITQFMHSPLK SHLDAVYIGC VWKHICIFNM HLEKGVLVNV AEAKLRTMAF GICELNWLKM ILKRLEDPML YYDNKATINI SHNLVHHDIH
1101: KLAGSCFDES LTKSNVP
0101: VNYAMFIWRR WTSLMKQLSI FTDCTILVHL DTGIKPHWWP YHVLLYIIHP RICIISYMKW QTLIVDRKQS QDFELLLKTE NDCAAAVQKG YISSKLYELI
0201: QIIRSLGMPS QVVCLIFVER NITAKVLERF IKNVCFLSHF TVSYLAGGSS SVDALTPKTQ KDILDSFRSG KANLLFTTDV PDCSCVIRFD LPKTARSYIQ
0301: SHGRARQAGS HYVIMLERGN LQQRDLLFDI IKNKHSTVDI ALNRDQDSLV SIVSINEDLG AYYVDSTGAS VTADSSVSLI NTYCQNLPRD KYVLHSQTNF
0401: QVHFGCGYYE CTITLPPNAA IQTIVGRANQ NSHVAKKLAC LEACKRLHQS GALNDHLLPC VQEHLDDVKA EKTGESAKGA GTTKRKELHG XXXXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0601: XXXXXXXXFP LDSSCAHKHD KVSINWKAIS ASASVVKFMR EIYSSGGHNG PVVDFKCGSS ETRGSMPEMI HLANRFAEPQ SLKGVVVLAI HTGMIYCVLD
0701: VVTGLTADSP FDGNSWKQSS DTWTFSEYFN NAHTPPHPPR CHHHHHLISR SALTERRRTR RHRAPPKTSL LLFAFASTIA SAAVTSSMSP SKRPIDSADG
0801: EGSPVTAKKQ KHEPEEFEPR SHQLAVYEVA LRTNTIAVLE TGSGKTMISV MLVKHFGEEL KKRGDQRLIL FLAPTVHLVV QQYETIKVHT DVDVQYCCGA
0901: KAVDAWSIAS WQKEVSTYQV MVMTPQILLD VLRKGFLNLD MVHLMVIDEC HHALGDHPYN KLMKEFYHKS VLKPHIFGMT ASPILRKGKM VRKLFHLSRI
1001: RLDSAYAVSV ITQFMHSPLK SHLDAVYIGC VWKHICIFNM HLEKGVLVNV AEAKLRTMAF GICELNWLKM ILKRLEDPML YYDNKATINI SHNLVHHDIH
1101: KLAGSCFDES LTKSNVP
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.