Factsheet for GSMUA_Achr7P11120_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15170_001
GSMUA_Achr3P05880_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P11120_001
GSMUA_Achr7P11130_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT3G20420.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT3G20420.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944
AT3G20420.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT3G20420.1	GSMUA_Achr2P15170_001	AT3G20420.1	21798944
AT3G20420.1	GSMUA_Achr7P11120_001	AT3G20420.1	21798944
AT3G20420.1	GSMUA_Achr7P11130_001	AT3G20420.1	21798944
AT3G20420.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT3G20420.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT3G20420.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT3G20420.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	77.4	92.38
GSMUA_Achr2P15170_001	Banana	cytosol	52.09	62.35
Os05t0271300-00	Rice	cytosol, nucleus, plastid	43.73	56.15
TraesCS7A01G512700.1	Wheat	mitochondrion	49.39	55.37
TraesCS7B01G428200.1	Wheat	mitochondrion	49.63	55.34
Zm00001d009879_P002	Maize	plastid	51.11	55.32
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.88	54.72
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	49.39	54.62
TraesCS7D01G504300.3	Wheat	mitochondrion	49.63	54.59
TraesCS7B01G430900.2	Wheat	mitochondrion	50.12	54.55
VIT_19s0090g00940.t01	Wine grape	cytosol	44.96	54.3
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	49.63	54.3
TraesCS7A01G513500.1	Wheat	nucleus	42.26	54.26
TraesCSU01G086900.1	Wheat	mitochondrion	48.4	53.1
HORVU7Hr1G115000.1	Barley	nucleus	24.08	52.13
HORVU7Hr1G115100.2	Barley	plastid	49.88	49.75
KRH14361	Soybean	cytosol	41.28	48.7
PGSC0003DMT400033487	Potato	cytosol	43.0	47.68
KXG21693	Sorghum	plastid	51.35	47.29
Solyc10g006210.1.1	Tomato	cytosol	12.53	47.22
Bra035784.1-P	Field mustard	cytosol	37.84	45.97
CDY54644	Canola	cytosol	37.84	45.97
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	42.26	43.99
CDY29825	Canola	plastid	38.33	41.6
PGSC0003DMT400037378	Potato	cytosol	30.22	41.55
AT3G20420.1	Thale cress	plastid	39.07	40.66
Os01t0551100-01	Rice	cytosol	25.31	40.23
GSMUA_Achr10P...	Banana	nucleus	27.27	16.74
AT5G45150.1	Thale cress	cytosol	30.47	12.96
GSMUA_Achr8P12350_001	Banana	nucleus	33.66	7.54
GSMUA_Achr9P22460_001	Banana	cytosol, golgi, nucleus	25.06	7.48
GSMUA_Achr5P10880_001	Banana	cytosol	25.8	6.57
GSMUA_Achr10P...	Banana	extracellular	2.46	5.35
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	6.88	2.51
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	0.74	2.08
GSMUA_Achr9P22470_001	Banana	cytosol	1.47	1.57
GSMUA_Achr10P...	Banana	cytosol	0.25	0.24

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502
EnsemblPlantsGene:GSMUA_Achr7G11120_001	EnsemblPlants:GSMUA_Achr7P11120_001	EnsemblPlants:GSMUA_Achr7T11120_001	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389
UniProt:M0TGK0	PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535
SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI0002965DA5	InterPro:dsRBD_dom	SEG:seg	:

Description

Ribonuclease 3-like protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G11120_001]

Coordinates

chr7:-:8868146..8876107

Molecular Weight (calculated)

45764.0 Da

IEP (calculated)

6.705

GRAVY (calculated)

-0.261

Length

407 amino acids

Sequence
(BLAST)

001: MNRSCPEAEE RDGGLRRAVT EIERLLGYVF RDQSLLAEAL THSSYPDHRS YQRLEFVGDA ALSLAITNHL YLTNPDLGPG RLSALRAANI STEKLARVAV
101: RHRLYRFLRR NSHALDQMVF DFTNLVMMER EEEIGWAPYG GSTVKAPKVL ADIVESIAAA VYVDCNFDLE LLWKVFRGIL EPIITSENMD EQPVTTLYEL
201: CQKQGRSIEI KNWKRGFVNI TNVFVDGDLM GIGCSEQKTI AKLNAARDAL QKLSTLEEAD MEVELSSAAG NGTAEEKDGS KQKLNQFCSK KHWIMPIYKV
301: EKEQGPPHSK RFICSVQVET KGCTFITFGD PKSRVKDAEN SAAFKMLSDI LNHMVCIQLP NSFACSKMLK KGFSNLVELV FLLEKSLNKE NNLFSEGIEC
401: TKNLVSC

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.