Factsheet for TraesCS7A01G513400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G313300.1
TraesCS2A01G504600.1
TraesCS2B01G332100.1
TraesCS2D01G311800.1
TraesCS2D01G505300.1
TraesCS6A01G198600.1
TraesCS6A01G306500.1
TraesCS6B01G230000.1
TraesCS6B01G334900.1
TraesCS6D01G184500.2
TraesCS6D01G285600.1
TraesCS7A01G512700.1
TraesCS7A01G513400.1
TraesCS7A01G513500.1
TraesCS7B01G091900.1
TraesCS7B01G428200.1
TraesCS7B01G430900.2
TraesCS7D01G187600.1
TraesCS7D01G398600.2
TraesCS7D01G502800.1
TraesCS7D01G504300.3
TraesCSU01G086900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	TraesCS2A01G313300.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS2B01G332100.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS2D01G311800.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS6A01G198600.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS6B01G230000.1	AT1G54060.1	21798944
AT3G20420.1	TraesCS6D01G184500.2	AT1G54060.1	21798944
AT3G20420.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT3G20420.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT3G20420.1	TraesCS7A01G512700.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7A01G513400.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7A01G513500.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7B01G428200.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7B01G430900.2	AT3G20420.1	21798944
AT3G20420.1	TraesCS7D01G398600.2	AT3G20420.1	21798944
AT3G20420.1	TraesCS7D01G502800.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS7D01G504300.3	AT3G20420.1	21798944
AT3G20420.1	TraesCSU01G086900.1	AT3G20420.1	21798944
AT3G20420.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G20420.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G513500.1	Wheat	nucleus	83.29	97.48
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	93.53	94.29
TraesCS7B01G430900.2	Wheat	mitochondrion	94.34	93.58
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	93.26	93.01
TraesCS7D01G504300.3	Wheat	mitochondrion	92.72	92.97
TraesCSU01G086900.1	Wheat	mitochondrion	91.64	91.64
HORVU7Hr1G115000.1	Barley	nucleus	44.47	87.77
TraesCS7A01G512700.1	Wheat	mitochondrion	84.64	86.5
HORVU7Hr1G115100.2	Barley	plastid	89.76	81.62
Os05t0271300-00	Rice	cytosol, nucleus, plastid	67.92	79.5
Zm00001d009879_P002	Maize	plastid	77.63	76.6
KXG21693	Sorghum	plastid	74.93	62.9
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	53.37	58.06
VIT_19s0090g00940.t01	Wine grape	cytosol	45.55	50.15
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	54.72	49.88
GSMUA_Achr2P15170_001	Banana	cytosol	44.74	48.82
Solyc10g006210.1.1	Tomato	cytosol	14.02	48.15
PGSC0003DMT400033487	Potato	cytosol	46.09	46.59
KRH14361	Soybean	cytosol	42.32	45.51
CDY54644	Canola	cytosol	39.62	43.88
Bra035784.1-P	Field mustard	cytosol	39.62	43.88
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	44.74	42.46
PGSC0003DMT400037378	Potato	cytosol	31.81	39.86
CDY29825	Canola	plastid	39.89	39.47
AT3G20420.1	Thale cress	plastid	40.16	38.11
TraesCS7A01G336500.1	Wheat	cytosol	27.76	33.01
AT5G45150.1	Thale cress	cytosol	28.84	11.18
TraesCS2A01G364700.2	Wheat	cytosol	28.57	6.53
TraesCS1A01G160900.1	Wheat	nucleus	28.57	6.52
TraesCS5A01G516000.1	Wheat	cytosol, nucleus, plastid	34.5	6.49
TraesCS3A01G415400.2	Wheat	nucleus	27.22	6.02
TraesCS5A01G073600.1	Wheat	cytosol, nucleus, plastid	21.83	5.79

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	PFAM:PF00636	PFAM:PF14709
ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom
InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	EnsemblPlantsGene:TraesCS7A01G513400
EnsemblPlants:TraesCS7A01G513400.1	TIGR:cd00048	TIGR:cd00593	InterPro:dsRBD_dom	SEG:seg	:

Description

No Description!

Coordinates

chr7A:-:700278009..700329613

Molecular Weight (calculated)

40637.0 Da

IEP (calculated)

9.136

GRAVY (calculated)

-0.203

Length

371 amino acids

Sequence
(BLAST)

001: MMEPASRKRR ASSPPPSGPV TLPPPGFVAD REEAAARVER LLQYQFNNRS LLEEALTHQS FAGGAAASYQ RLEFVGDAAL GLAFSNFLYL TNPTVGPGAL
101: STLRAANIST EKLARAAVRH DLYRLLRRNC PRLDLLVGQF IQSVKQELEG DLGTTPYGGT VFKAPKVLAD IVEAIAAAVY VDCNFNLEKL WKVTRFLFEP
201: IVTAETIDEQ PVSTLHELCQ KHGKDIKFKT WQKGGTAVVN VFVGGALVGM GSSEQMVIAK LNATRDALSK LLGGGNQQVL TTRVGHGSGV EVGELRECKQ
301: KLIEQCSRKH WPKPIFKLEK TDGPAHDRTF VYSVQVETQG GIWLTLGEPM SRVKDAENSG AQKMLEHLLK L

Best Arabidopsis Sequence Match ( AT5G45150.1 )
(BLAST)

001: MNSVEAVEKI LNYSFVNKTL LKEAITQKSP LFDRLEFFGD SILEVAFTNY ICHTYPNLKV KELRDLRTAN VSNEKFARIA VNHNLHHFLL LQNPSLFKKV
101: KNFAEAVRKE DDPVPYGGLV KAPKILADTL ESIAATVFID VNYDVKRLWE IFRSLLEPIY TPDDLLLQPK LPFLTLFRLA DKHGSESTSG IRKMTTSTKI
201: LLRNKDCLDV DLEDVKGKSF EICSTELFSL STVSENSLTD EMSQEEVVID EDSPNVEPED VKGKLFEICY TRKLQIQTGS SGNPLTYEMT TKQMVVDKDS
301: LHVEPVNGRG ELIEICTKNK WPRPIFSVQE EKGPKNEPKF VCSVKIEIPN IEGTFHMKGD IKSKKKQAEN SLAYHMIRAL ESSLVSLVIS NLQKPKSLDE
401: KNNPLLFSSE MDSSVEAVEK ILNYSFVNKT LLKELLTHNN SPLFQGLMFV GESALSLAFT KHLYLTYPML EPKDLSVLRD ANTCHDKYAC VAVKKGIYQS
501: FIGSVPKPEK MTTDFIELMG KEDDPYRVVK APKILVNLLA GVAGAVYIDV KYNVQRLLEI FRVLLEPIYT LDDLRMQLKQ PFLMLFRLAD KHGKQIDFRY
601: SKDGGSRKNI AQVYMDDMFI ASGCAKRIDT AKLLAAEEAI QKLSECMPIE KIIHQDNLDG EVIQTGSSSL LTAFENPLTE EMTQEQMVID EDSLDVEWKL
701: FETEELQIQT GSSSMSTVSE NPLPCEITPT KMVIGEVSPH VELEDVKGKS FEISSTETSS LPIAFENPLT NELTQEQMVI DENSPYVEPV DTKGKLFESC
801: SVESSSLPTT SENPSTYEMT TKQMVVDKDS PHVEPEDEKG KLFEICAKNK WPNPIFSVEE ERGQQNEQKI VCSVKIEIPN IEGTFHIKGD AKPTKKEAEN
901: SSADHMIRAL ESSVMSLVIT NLQMHENLDG KKKNLQMKES LNENKTLLHS TKRRRRL

Arabidopsis Description

RTL3Ribonuclease 3-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.