Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035784.1-P | Field mustard | cytosol | 65.22 | 76.12 |
| CDY54644 | Canola | cytosol | 65.22 | 76.12 |
| CDY29825 | Canola | plastid | 69.57 | 72.53 |
| VIT_19s0090g00940.t01 | Wine grape | cytosol | 46.29 | 53.71 |
| KRH14361 | Soybean | cytosol | 45.52 | 51.59 |
| PGSC0003DMT400033487 | Potato | cytosol | 45.27 | 48.23 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 45.01 | 45.01 |
| GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 39.13 | 44.87 |
| Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 36.06 | 44.48 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 34.78 | 42.9 |
| GSMUA_Achr2P15170_001 | Banana | cytosol | 36.32 | 41.76 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 38.11 | 40.16 |
| TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 38.11 | 40.05 |
| TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 37.6 | 39.95 |
| TraesCS7A01G512700.1 | Wheat | mitochondrion | 37.08 | 39.94 |
| Zm00001d009879_P002 | Maize | plastid | 38.36 | 39.89 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 38.11 | 39.84 |
| TraesCS7D01G504300.3 | Wheat | mitochondrion | 37.6 | 39.73 |
| TraesCSU01G086900.1 | Wheat | mitochondrion | 37.08 | 39.08 |
| GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 40.66 | 39.07 |
| TraesCS7B01G428200.1 | Wheat | mitochondrion | 36.32 | 38.9 |
| HORVU7Hr1G115000.1 | Barley | nucleus | 18.41 | 38.3 |
| HORVU7Hr1G115100.2 | Barley | plastid | 38.87 | 37.25 |
| KXG21693 | Sorghum | plastid | 38.36 | 33.94 |
| AT4G15417.2 | Thale cress | mitochondrion | 23.53 | 31.83 |
| Os01t0551100-01 | Rice | cytosol | 20.2 | 30.86 |
| AT5G45150.1 | Thale cress | cytosol | 38.36 | 15.67 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 25.58 | 6.33 |
| AT5G20320.1 | Thale cress | cytosol | 24.81 | 5.7 |
| AT1G01040.2 | Thale cress | nucleus | 27.62 | 5.65 |
| AT3G03300.1 | Thale cress | nucleus | 18.67 | 5.26 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.12 | Gene3D:3.30.160.20 | EntrezGene:821587 | ProteinID:AEE76376.1 | ArrayExpress:AT3G20420 |
| EnsemblPlantsGene:AT3G20420 | RefSeq:AT3G20420 | TAIR:AT3G20420 | RefSeq:AT3G20420-TAIR-G | EnsemblPlants:AT3G20420.1 | TAIR:AT3G20420.1 |
| EMBL:AY042815 | EMBL:AY081681 | ProteinID:BAB02825.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 |
| GO:GO:0030422 | GO:GO:0040029 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090501 | GO:GO:0090502 |
| InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 | RefSeq:NP_566661.1 | PFAM:PF00035 | PFAM:PF00636 |
| PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0007632 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020094 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50137 | PFscan:PS50142 | PANTHER:PTHR14950 |
| PANTHER:PTHR14950:SF35 | UniProt:Q9LTQ0 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | Symbol:RTL2 | SMART:SM00358 |
| SMART:SM00535 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI00000A37A2 | InterPro:dsRBD_dom | SEG:seg |
Description
RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
Coordinates
chr3:-:7119191..7121023
Molecular Weight (calculated)
44111.0 Da
IEP (calculated)
7.934
GRAVY (calculated)
-0.296
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.