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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 5
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90592 Canola cytosol, nucleus, peroxisome 58.82 59.86
Bra012789.1-P Field mustard cytosol, nucleus, peroxisome 58.82 59.86
CDY09765 Canola cytosol, nucleus, peroxisome 58.13 59.15
Bra039552.1-P Field mustard cytosol 55.02 56.18
CDY48286 Canola cytosol 53.98 55.12
CDY22924 Canola cytosol 53.63 54.77
VIT_12s0059g01120.t01 Wine grape cytosol 44.64 44.95
Solyc05g041920.2.1 Tomato cytosol 38.75 42.11
PGSC0003DMT400086351 Potato cytosol 29.07 41.38
PGSC0003DMT400053499 Potato mitochondrion 40.83 40.55
Solyc07g049150.2.1 Tomato cytosol 34.26 36.94
EES13704 Sorghum cytosol 37.02 36.77
Solyc07g049160.2.1 Tomato mitochondrion 37.02 36.52
PGSC0003DMT400001805 Potato mitochondrion 37.02 36.52
Os06t0358800-01 Rice cytosol 37.72 36.45
PGSC0003DMT400001808 Potato cytosol 31.49 36.26
TraesCS7D01G344100.1 Wheat cytosol 37.37 34.95
TraesCS7B01G248100.1 Wheat cytosol 36.68 34.3
TraesCS7A01G336500.1 Wheat cytosol 37.02 34.29
Solyc05g024210.1.1 Tomato cytosol 39.79 34.23
TraesCS7D01G344200.1 Wheat cytosol 36.68 33.87
Zm00001d032362_P002 Maize mitochondrion 38.06 33.43
HORVU7Hr1G082860.4 Barley plastid 37.37 30.08
TraesCS2D01G479300.1 Wheat plastid 30.45 25.43
AT3G20420.1 Thale cress plastid 31.83 23.53
AT5G45150.1 Thale cress cytosol 19.72 5.96
AT3G03300.1 Thale cress nucleus 28.03 5.84
AT1G01040.2 Thale cress nucleus 34.26 5.18
AT3G43920.2 Thale cress cytosol, nucleus, plastid 26.99 4.94
AT5G20320.1 Thale cress cytosol 26.99 4.58
GSMUA_Achr10P... Banana extracellular 2.77 4.28
GSMUA_Achr9P22470_001 Banana cytosol 2.42 1.83
Protein Annotations
Gene3D:1.10.1520.10Gene3D:3.30.160.20MapMan:35.1EntrezGene:827212UniProt:A0A1P8B4K5ProteinID:ANM66525.1
ArrayExpress:AT4G15417EnsemblPlantsGene:AT4G15417RefSeq:AT4G15417TAIR:AT4G15417RefSeq:AT4G15417-TAIR-GEnsemblPlants:AT4G15417.2
Symbol:ATRTL1GO:GO:0003674GO:GO:0003824GO:GO:0004518GO:GO:0004525GO:GO:0006139
GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0090501
GO:GO:0090502InterPro:IPR000999InterPro:IPR036389RefSeq:NP_001328413.1RefSeq:NP_680697.4ProteinID:OAP00106.1
PFAM:PF00636PFscan:PS50142PANTHER:PTHR14950PANTHER:PTHR14950:SF35InterPro:RNase_III_domInterPro:RNase_III_sf
SMART:SM00535SUPFAM:SSF54768SUPFAM:SSF69065UniParc:UPI000849348D::
Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
Coordinates
chr4:+:8821651..8823076
Molecular Weight (calculated)
32934.8 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.402
Length
289 amino acids
Sequence
(BLAST)
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.