Factsheet for PGSC0003DMT400001805

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049160.2.1	Tomato	mitochondrion	95.9	95.9
PGSC0003DMT400086351	Potato	cytosol	34.81	50.25
PGSC0003DMT400053499	Potato	mitochondrion	48.46	48.8
PGSC0003DMT400001808	Potato	cytosol	38.57	45.02
VIT_12s0059g01120.t01	Wine grape	cytosol	42.66	43.55
CDY48286	Canola	cytosol	38.91	40.28
Bra039552.1-P	Field mustard	cytosol	38.91	40.28
CDY22924	Canola	cytosol	38.57	39.93
CDY09765	Canola	cytosol, nucleus, peroxisome	38.57	39.79
CDX90592	Canola	cytosol, nucleus, peroxisome	38.57	39.79
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	38.57	39.79
AT4G15417.2	Thale cress	mitochondrion	36.52	37.02
Os06t0358800-01	Rice	cytosol	37.2	36.45
EES13704	Sorghum	cytosol	35.15	35.4
TraesCS7D01G344100.1	Wheat	cytosol	35.84	33.98
TraesCS7B01G248100.1	Wheat	cytosol	35.84	33.98
TraesCS7A01G336500.1	Wheat	cytosol	36.18	33.97
TraesCS7D01G344200.1	Wheat	cytosol	35.49	33.23
Zm00001d032362_P002	Maize	mitochondrion	35.15	31.31
HORVU7Hr1G082860.4	Barley	plastid	35.49	28.97
PGSC0003DMT400037378	Potato	cytosol	27.3	27.03
PGSC0003DMT400033487	Potato	cytosol	31.74	25.34
TraesCS2D01G479300.1	Wheat	plastid	29.01	24.57
PGSC0003DMT400042918	Potato	nucleus	27.3	7.25
PGSC0003DMT400029301	Potato	nucleus	32.76	5.02
GSMUA_Achr10P...	Banana	extracellular	1.71	2.67
GSMUA_Achr9P22470_001	Banana	cytosol	2.05	1.57
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	0.68	0.5

Protein Annotations

Gene3D:1.10.1520.10	EntrezGene:102599964	Gene3D:3.30.160.20	MapMan:35.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999
InterPro:IPR036389	UniProt:M0ZJ44	PFAM:PF00636	EnsemblPlantsGene:PGSC0003DMG400000675	PGSC:PGSC0003DMG400000675	EnsemblPlants:PGSC0003DMT400001805
ScanProsite:PS00517	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI000294B95B	RefSeq:XP_006357943.1	SEG:seg

Description

Dicer-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000675]

Coordinates

chr7:-:44873925..44879232

Molecular Weight (calculated)

33539.5 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.323

Length

293 amino acids

Sequence
(BLAST)

001: MESWLRPFLA QTLNWVSTQN LHKYGAVLNR FLPGILENEE ATKRALQDDK SQNVEEVQKI IGYDFNDRNL LRQAFTHTSY HKDCISYERL EYVGDSVLNF
101: MITKEHFFKY PSLPPGLLSP LRAANVDTEK LARAAVKHSF HKYLQHGKPI LTRRIQSFIN VLPEYPLHSH GLIDAPKVLA DVVESTIGAV FIDSNSSIDT
201: TWEVAKILLE PIITPEMLET NPVKKLYETC QKHKLKVRVV DMWSHDGSFE VFVDNQMRGK GMCHVKKEIA LNRAANKAYN EVIGMLSVGN MNK

Best Arabidopsis Sequence Match ( AT4G15417.1 )
(BLAST)

001: MGSQLSNAID GKDNTKTIGS ADPDQLMEIE SLEKILNYKF KDKSLLLKAF TDASYVDDKS ESYELLELLG DSILNMGIIY DFIKLYPKEA PGPLTKLRAV
101: NVDTEKLARV AVNHQLYSYL RHKKPLLEEQ ILEFVEAMEK YPLHSNGLLK VPKVLADIVE STIGAIFMDC NSTETVWKVI KPLLEPIIHL DKMKSHPMTE
201: LNEMCQKRNL KLTSKDTWEE NQTYCFHIED KFVGCGHHPV KKETARNFAA KNAIDNFAKF FGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.