Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039552.1-P | Field mustard | cytosol | 97.17 | 97.17 |
| CDY22924 | Canola | cytosol | 96.82 | 96.82 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 76.68 | 76.41 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 75.97 | 75.7 |
| AT4G15417.2 | Thale cress | mitochondrion | 55.12 | 53.98 |
| PGSC0003DMT400086351 | Potato | cytosol | 33.22 | 46.31 |
| Solyc05g041920.2.1 | Tomato | cytosol | 41.7 | 44.36 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 44.17 | 43.55 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 42.76 | 41.58 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 41.34 | 39.93 |
| EES13704 | Sorghum | cytosol | 40.64 | 39.52 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 40.28 | 38.91 |
| PGSC0003DMT400001808 | Potato | cytosol | 33.57 | 37.85 |
| Os06t0358800-01 | Rice | cytosol | 39.93 | 37.79 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 39.93 | 36.57 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 39.93 | 36.57 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 39.93 | 36.1 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 39.58 | 35.9 |
| Solyc05g024210.1.1 | Tomato | cytosol | 41.7 | 35.12 |
| Solyc07g049150.2.1 | Tomato | cytosol | 32.51 | 34.33 |
| Zm00001d032362_P002 | Maize | mitochondrion | 39.58 | 34.04 |
| HORVU7Hr1G082860.4 | Barley | plastid | 40.28 | 31.75 |
| TraesCS2D01G479300.1 | Wheat | plastid | 33.22 | 27.17 |
| CDY54644 | Canola | cytosol | 32.16 | 27.16 |
| CDY29825 | Canola | plastid | 31.45 | 23.73 |
| CDY30942 | Canola | nucleus | 29.68 | 6.66 |
| CDY50692 | Canola | nucleus | 30.74 | 6.26 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 30.39 | 6.2 |
| CDY21223 | Canola | nucleus | 30.74 | 5.68 |
| CDY15207 | Canola | nucleus | 35.34 | 5.53 |
| CDX90002 | Canola | nucleus | 35.34 | 5.52 |
| CDY35811 | Canola | nucleus | 27.92 | 4.81 |
| CDX92469 | Canola | nucleus, plastid | 27.56 | 4.75 |
| GSMUA_Achr10P... | Banana | extracellular | 2.47 | 3.74 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 2.12 | 1.57 |
| CDY50691 | Canola | nucleus | 2.12 | 1.07 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:3.30.160.20 | MapMan:35.1 | GO:A0A078IE58 | UniProt:A0A078IE58 | EnsemblPlants:CDY48286 |
| ProteinID:CDY48286 | ProteinID:CDY48286.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00089164001 | InterPro:IPR000999 | InterPro:IPR036389 | PFAM:PF00636 |
| PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0004EBE229 | : | : | : |
Description
BnaC01g31400DBnaC01g31400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE58]
Coordinates
chrLK032764:-:9399..10946
Molecular Weight (calculated)
32541.9 Da
IEP (calculated)
5.803
GRAVY (calculated)
-0.405
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTQLPNADT ESLQRLLNLS LGVNDNNTEN VNSSQPANSI GTDQPLGIEF VEKILNYEFK DKNLLLQAFT DASFDENCVS YERLEFLGDT VLNMIVTKYL
101: YFRYEDATPG SLTRLRAFNV DREKLARVAV KYNLHRYLRH KKPLLDDQIL KFAKDIEKYP LHSRHLLETP KTLADIVEST IGALYTDCDC FETVCKVVKP
201: LLEPIIPLDK LENHPVTELN EMCQKKNLKL KFDDNTWEVD KTFRVFIEDH LVGHGHHLVK KDIAKNCAAQ NALDEFSHTF PQI
101: YFRYEDATPG SLTRLRAFNV DREKLARVAV KYNLHRYLRH KKPLLDDQIL KFAKDIEKYP LHSRHLLETP KTLADIVEST IGALYTDCDC FETVCKVVKP
201: LLEPIIPLDK LENHPVTELN EMCQKKNLKL KFDDNTWEVD KTFRVFIEDH LVGHGHHLVK KDIAKNCAAQ NALDEFSHTF PQI
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.