Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15207 | Canola | nucleus | 97.63 | 97.79 |
| Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 98.9 | 97.07 |
| AT1G01040.2 | Thale cress | nucleus | 92.16 | 87.43 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 76.93 | 71.6 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 76.82 | 71.57 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 75.22 | 69.97 |
| PGSC0003DMT400029301 | Potato | nucleus | 73.07 | 69.17 |
| Solyc10g005130.2.1 | Tomato | nucleus | 71.85 | 68.96 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 70.81 | 68.14 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 72.19 | 67.81 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 71.8 | 67.37 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 67.0 | 66.78 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 70.36 | 64.66 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 70.64 | 64.61 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 70.36 | 63.85 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 70.42 | 63.04 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 5.74 | 36.62 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 5.68 | 36.27 |
| CDY48286 | Canola | cytosol | 5.52 | 35.34 |
| CDY22924 | Canola | cytosol | 5.52 | 35.34 |
| CDY54644 | Canola | cytosol | 5.96 | 32.24 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 23.62 | 30.84 |
| CDY50692 | Canola | nucleus | 23.45 | 30.6 |
| CDY29825 | Canola | plastid | 6.13 | 29.6 |
| CDY50691 | Canola | nucleus | 9.16 | 29.59 |
| CDY30942 | Canola | nucleus | 20.09 | 28.87 |
| CDY21223 | Canola | nucleus | 22.79 | 26.98 |
| CDX92469 | Canola | nucleus, plastid | 24.34 | 26.86 |
| CDY35811 | Canola | nucleus | 24.23 | 26.75 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:16.10.2.1.1 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| GO:A0A078DM66 | EnsemblPlants:CDX90002 | ProteinID:CDX90002 | ProteinID:CDX90002.1 | ncoils:Coil | InterPro:Dicer_dimer_sf |
| InterPro:Dicer_dimerisation_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016075 | GO:GO:0016787 | GO:GO:0016891 |
| EnsemblPlantsGene:GSBRNA2T00150500001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 |
| InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | HAMAP:MF_00104 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF44 | InterPro:RNase_III |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0004EE6923 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
BnaA10g00800D
Coordinates
chrLK031861:+:1201738..1209221
Molecular Weight (calculated)
202158.0 Da
IEP (calculated)
6.288
GRAVY (calculated)
-0.425
Length
1812 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVMEDERSNK DVNNKPSYWL DACEDISCDL IDDLVSDFDP SSVAVAESIV NNDFFGGIDH ILDTIKNGGG LPNNEAPQLN PGDVVTKESA LQKTGLKRDD
0101: ALKEEGDKNR KRARVCSYQS EKNRKRTRSY EDTGGHNKRR DGYNYRRDGR DSREGRGYWE RDKVGSNELV YRSGTWEADH ERDVKKESRR SHREDAEEDN
0201: KKSKPEEQRK EKVVEEQARR YQLDVLEQAK AKNTIAFLET GAGKTLIAIL LIKSVHKDLM SQNRKMLSVF LVPKVPLSKQ VLVMTAQILL NILRHSIIRM
0301: ESINLLILDE CHHAVKKHPY SLVMSEFYHT TSKDKRPAIF GMTASPVNLK GVSSQVDCAI KIRNLETKLD STVCTIKDRK ELEKHVPMPS EIVVEYDKAA
0401: TMWSFHEKIK QMIAAVEEAA KASSRKSKWQ FMGARDAGAK EELKQVYGVS ERTESDGAAN LIHKLRAINY TLAELGQWCA YKVAQSFLTA LQSDERVNFQ
0501: VDVKFQESYL SEVVSLLQCE LVEGAAAEKA ATECSKPENG NANDEIEEGE LPDDHVVSGG EHVDEVIGAA VADGKVTPKV QSLIKLLLKY QHTSDFRAIV
0601: FVERVVAALV LPKVFAELPS LGFIRCASMI GHNNSQEMKS SQMQDTISKF RDGQVTLLVA TSVAEEGLDI RQCNVVMRFD LAKTVLAYIQ SRGRARKPGS
0701: DYILMVEREN VSHAAFLRNA RNSEETLRKE AIERTDLSHL KDTSRLISID AVPGTVYKVE TTGAMVSLNS AVGLIHFYCS QLPGDRYAIL RPEFSMEKHE
0801: KPGGHTEYSC RLQLPCNAPF EILEGPLCSS MRLAQQAVCL AGCKKLHEMG AFTDMLLPDK GSGQDAEKAD QDEEGEPVPG TARHREFYPE GVADVLKGDW
0901: ILSGKEDCES SKLFHLYMYS VRCEDSGSSK DPFLTEVSEF AVLFGNELDA EVLSMSMDLY VARAMITKAS LVFKGSLDIT ESQLSSIKKF HVRLMSIVLD
1001: VDVEPSTTPW DPAKAYLFVP VTDNTKGINW ELIEKITETT VWDNPLQRAR PDVYLGTNER TLGGDRREYG FGKLRNNIGL GQQKSHPTYG IRGAVASFDV
1101: VRASGLLPVR EEVRSDVSQG KLMMADGCMV ADNLIGKIVT AAHSGKRFYV DSICYDMSAE TSFPRKEGYL GPLEYNTYAD YYKQKYGVDL NCKQQPLIKG
1201: RGVSYCKNLL SPRFEQSGES ETILDKTYYV FLPPELCVVH PLSGSLVRGA QRLPSIMRRV ESMLLAVQLK NLISYPIPTS KILEALTAAS CQETFCYERA
1301: ELLGDAYLKW IVSRFLFLKY PQKHEGQLTR MRQQMSYIQA DRFAPSRWSA PGVPPVYDED TKDGGGGSSF FDEEQKQASS EDVFEDGEME DGELEGDLSS
1401: YRVLSSKTLA DVVEALIGVY YVEGGKAAAN HLMKWIGIHV EDDPEETEGA VKPVSVPESV LKSIDFVGLE RALKYEFTEK GLLVEAITHA SRPSSGVSCY
1501: QRLEFVGDAV LDHLITRHLF FTYTSLPPGR LTDLRAAAVN NENFARVAVK HKLHLYLRHG SSALEKQIRE FVKEVLTESS KPGFNSFGLG DCKAPKVLGD
1601: IVESIAGAIF LDSGRDTSAA WKVFQPLLQP MVTPETLPMH PVRELQERCQ QQAEGLEYKA SRSGNTATVE VFIDGVQVGV AQNPQKKMAQ KLAARNALAA
1701: LKEKEIAESK EKAANGNAGD DSENGNKKNG NQTFTRQTLN DICLRKNWPM PSYRCVKEGG PAHAKRFTFG VRVNTSDRGW TDECIGEPMP SVKKAKDSAA
1801: SLLLELLNKT YS
0101: ALKEEGDKNR KRARVCSYQS EKNRKRTRSY EDTGGHNKRR DGYNYRRDGR DSREGRGYWE RDKVGSNELV YRSGTWEADH ERDVKKESRR SHREDAEEDN
0201: KKSKPEEQRK EKVVEEQARR YQLDVLEQAK AKNTIAFLET GAGKTLIAIL LIKSVHKDLM SQNRKMLSVF LVPKVPLSKQ VLVMTAQILL NILRHSIIRM
0301: ESINLLILDE CHHAVKKHPY SLVMSEFYHT TSKDKRPAIF GMTASPVNLK GVSSQVDCAI KIRNLETKLD STVCTIKDRK ELEKHVPMPS EIVVEYDKAA
0401: TMWSFHEKIK QMIAAVEEAA KASSRKSKWQ FMGARDAGAK EELKQVYGVS ERTESDGAAN LIHKLRAINY TLAELGQWCA YKVAQSFLTA LQSDERVNFQ
0501: VDVKFQESYL SEVVSLLQCE LVEGAAAEKA ATECSKPENG NANDEIEEGE LPDDHVVSGG EHVDEVIGAA VADGKVTPKV QSLIKLLLKY QHTSDFRAIV
0601: FVERVVAALV LPKVFAELPS LGFIRCASMI GHNNSQEMKS SQMQDTISKF RDGQVTLLVA TSVAEEGLDI RQCNVVMRFD LAKTVLAYIQ SRGRARKPGS
0701: DYILMVEREN VSHAAFLRNA RNSEETLRKE AIERTDLSHL KDTSRLISID AVPGTVYKVE TTGAMVSLNS AVGLIHFYCS QLPGDRYAIL RPEFSMEKHE
0801: KPGGHTEYSC RLQLPCNAPF EILEGPLCSS MRLAQQAVCL AGCKKLHEMG AFTDMLLPDK GSGQDAEKAD QDEEGEPVPG TARHREFYPE GVADVLKGDW
0901: ILSGKEDCES SKLFHLYMYS VRCEDSGSSK DPFLTEVSEF AVLFGNELDA EVLSMSMDLY VARAMITKAS LVFKGSLDIT ESQLSSIKKF HVRLMSIVLD
1001: VDVEPSTTPW DPAKAYLFVP VTDNTKGINW ELIEKITETT VWDNPLQRAR PDVYLGTNER TLGGDRREYG FGKLRNNIGL GQQKSHPTYG IRGAVASFDV
1101: VRASGLLPVR EEVRSDVSQG KLMMADGCMV ADNLIGKIVT AAHSGKRFYV DSICYDMSAE TSFPRKEGYL GPLEYNTYAD YYKQKYGVDL NCKQQPLIKG
1201: RGVSYCKNLL SPRFEQSGES ETILDKTYYV FLPPELCVVH PLSGSLVRGA QRLPSIMRRV ESMLLAVQLK NLISYPIPTS KILEALTAAS CQETFCYERA
1301: ELLGDAYLKW IVSRFLFLKY PQKHEGQLTR MRQQMSYIQA DRFAPSRWSA PGVPPVYDED TKDGGGGSSF FDEEQKQASS EDVFEDGEME DGELEGDLSS
1401: YRVLSSKTLA DVVEALIGVY YVEGGKAAAN HLMKWIGIHV EDDPEETEGA VKPVSVPESV LKSIDFVGLE RALKYEFTEK GLLVEAITHA SRPSSGVSCY
1501: QRLEFVGDAV LDHLITRHLF FTYTSLPPGR LTDLRAAAVN NENFARVAVK HKLHLYLRHG SSALEKQIRE FVKEVLTESS KPGFNSFGLG DCKAPKVLGD
1601: IVESIAGAIF LDSGRDTSAA WKVFQPLLQP MVTPETLPMH PVRELQERCQ QQAEGLEYKA SRSGNTATVE VFIDGVQVGV AQNPQKKMAQ KLAARNALAA
1701: LKEKEIAESK EKAANGNAGD DSENGNKKNG NQTFTRQTLN DICLRKNWPM PSYRCVKEGG PAHAKRFTFG VRVNTSDRGW TDECIGEPMP SVKKAKDSAA
1801: SLLLELLNKT YS
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.