Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90002 | Canola | nucleus | 97.79 | 97.63 |
| Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 97.4 | 95.45 |
| AT1G01040.2 | Thale cress | nucleus | 91.82 | 86.96 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 76.84 | 71.39 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 76.73 | 71.36 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 75.35 | 69.97 |
| PGSC0003DMT400029301 | Potato | nucleus | 72.86 | 68.86 |
| Solyc10g005130.2.1 | Tomato | nucleus | 71.64 | 68.64 |
| Os03t0121800-01 | Rice | cytosol, nucleus, plasma membrane | 70.92 | 68.14 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 72.08 | 67.6 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 71.75 | 67.22 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 66.83 | 66.5 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 70.48 | 64.66 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 70.76 | 64.61 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 70.48 | 63.85 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 70.54 | 63.04 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 5.75 | 36.62 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 5.69 | 36.27 |
| CDY48286 | Canola | cytosol | 5.53 | 35.34 |
| CDY22924 | Canola | cytosol | 5.53 | 35.34 |
| CDY54644 | Canola | cytosol | 6.03 | 32.54 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 23.77 | 30.98 |
| CDY50692 | Canola | nucleus | 23.6 | 30.74 |
| CDY29825 | Canola | plastid | 6.19 | 29.87 |
| CDY50691 | Canola | nucleus | 9.23 | 29.77 |
| CDY30942 | Canola | nucleus | 20.07 | 28.79 |
| CDY21223 | Canola | nucleus | 22.89 | 27.04 |
| CDX92469 | Canola | nucleus, plastid | 24.43 | 26.92 |
| CDY35811 | Canola | nucleus | 24.32 | 26.81 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:16.10.2.1.1 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| GO:A0A078FQR9 | UniProt:A0A078FQR9 | EnsemblPlants:CDY15207 | ProteinID:CDY15207 | ProteinID:CDY15207.1 | InterPro:Dicer_dimer_sf |
| InterPro:Dicer_dimerisation_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016075 | GO:GO:0016787 | GO:GO:0016891 |
| GO:GO:0031047 | GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:GSBRNA2T00085395001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 |
| InterPro:IPR036389 | InterPro:IPR038248 | HAMAP:MF_00104 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf |
| PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | PFAM:PF14709 | ScanProsite:PS00517 |
| PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF44 | InterPro:RNase_III | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0004EE74CD | InterPro:dsRBD_dom | SEG:seg | : |
Description
BnaC05g00860DBnaC05g00860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQR9]
Coordinates
chrLK032052:-:435158..442475
Molecular Weight (calculated)
201555.0 Da
IEP (calculated)
6.343
GRAVY (calculated)
-0.411
Length
1809 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVMEDERSNK DVNKPSYWLD ACEDISCDLI DDLVSDFDPS SVAVAESIVN NDFFGGIDHI LDSIKNGGGL PNNEAPQLNP GDVTKENGLQ RSGVKRDDKE
0101: EGDKNRKRAR VCSYQSERSR GVESRKRTRS YEDTGGGHNK RRDGYNYYRR DGRGYWERDK VGSNQLVYRS GTWEADHERD VKKESRRKGD EKGEEEEKKG
0201: KPEEQRKEKV VEEQARRYQL DVLEQAKAKN TIAFLETGAG KTLIAILLIK SVHKDLMSQN RKMLSVFLVP KVPLSKQVLV MTAQILLNIL RHSIIRMESI
0301: NLLILDECHH AVKKHPYSLV MSEFYHTTSK DKRPAIFGMT ASPVNLKGVS SQVDCAIKIR NLETKLDSTV CTIKDRKELE KHVPMPSEIV VEYDKAATMW
0401: SFHEKIKQMI AAVEEAAKAS SRKSKWQFMG ARDAGAKEEL KQVYGVSERT ESDGAANLIH KLRAINYTLA ELGQWCAYKV AQSFLTALQS DERVNFQVDV
0501: KFQESYLSEV VSLLQCELVE GAAAEKAATE CSKPVNGDVN DEIEEGELPD DHVVSGGEHV DEVIGAAVAD GKVTPKVQSL IKLLLKYQHT SDFRAIVFVE
0601: RVVAALVLPK VLAELPSLGF IRCASMIGHN NSQEMKSSQM QDTISKFRDG QVTLLVATSV AEEGLDIRQC NVVMRFDLAK TVLAYIQSRG RARKPGSDYI
0701: LMVERENVSH AAFLRNARNS EETLRKEAIE RTDLSHLKDT SRLISIDAVP GTVYKVETTG AMVSLNSAVG LIHFYCSQLP GDRYAILRPE FSMEKHEKPG
0801: GHTEYSCRLQ LPCNAPFEIL EGPLCSSMRL AQQAVCLAGC KKLHEMGAFT DMLLPDKGSG QDAEKADQDE EGEPVPGTAR HREFYPEGVA DVLKGDWILS
0901: GKEVCESSKL FHLYMYSVRC EDSGSSKDPF LTEVSDFAVL FGNELDAEVL SMSMDLYVAR AMITKASLVF KGSLDITESQ LSSIKKFHVR LMSIVLDVDV
1001: EPSTTPWDPA KAYLFVPVTD STKGINWELI EKITETTVWD NPLQRARPDV YLGTNERTLG GDRREYGFGK LRNNIGLGQQ KSHPTYGIRG AVASFDVVRA
1101: SGLLPVREAV ERDVSQGKLM MADGCMVADN LIGKIVTAAH SGKRFYVDSI CYDMSADTSF PRKEGYLGPL EYNTYGDYYK QKYGVDLNCK QQPLIKGRGV
1201: SYCKNLLSPR FEQSGESETI LDKTYYVFLP PELCVVHPLS GSLVRGAQRL PSIMRRVESI LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL
1301: GDAYLKWIVS RFLFLKYPQK HEGQLTRMRQ QMSYIQADRF APSRWSAPGV PPVYDEDTKD GGGGSSFFDE EQKQASSEDV FEDGEMEDGE LEGDLSSYRV
1401: LSSKTLADVV EALIGVYYVE GGKAAANHLM KWIGIHVEDD PEETEGAVKP VSVPESVLKS IDFVGLERAL KYEFAEKGLL VEAITHASRP SSGVSCYQRL
1501: EFVGDAVLDH LITRHLFFTY TSLPPGRLTD LRAAAVNNEN FARVAVKHKL HLYLRHGSSA LEKQIREFVK EVLTESSKPG FNSFGLGDCK APKVLGDIVE
1601: SIAGAIFLDS GRDTSAAWKV FQPLLQPMVT PETLPMHPVR ELQERCQQQA EGLEYKASRS GNTATVEVFI DGVQVGVAQN PQKKMAQKLA ARNALAALKE
1701: KEIAESKEKA ANGNAGDESE NGNKKNGNQT FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAASLL
1801: LELLNKTYS
0101: EGDKNRKRAR VCSYQSERSR GVESRKRTRS YEDTGGGHNK RRDGYNYYRR DGRGYWERDK VGSNQLVYRS GTWEADHERD VKKESRRKGD EKGEEEEKKG
0201: KPEEQRKEKV VEEQARRYQL DVLEQAKAKN TIAFLETGAG KTLIAILLIK SVHKDLMSQN RKMLSVFLVP KVPLSKQVLV MTAQILLNIL RHSIIRMESI
0301: NLLILDECHH AVKKHPYSLV MSEFYHTTSK DKRPAIFGMT ASPVNLKGVS SQVDCAIKIR NLETKLDSTV CTIKDRKELE KHVPMPSEIV VEYDKAATMW
0401: SFHEKIKQMI AAVEEAAKAS SRKSKWQFMG ARDAGAKEEL KQVYGVSERT ESDGAANLIH KLRAINYTLA ELGQWCAYKV AQSFLTALQS DERVNFQVDV
0501: KFQESYLSEV VSLLQCELVE GAAAEKAATE CSKPVNGDVN DEIEEGELPD DHVVSGGEHV DEVIGAAVAD GKVTPKVQSL IKLLLKYQHT SDFRAIVFVE
0601: RVVAALVLPK VLAELPSLGF IRCASMIGHN NSQEMKSSQM QDTISKFRDG QVTLLVATSV AEEGLDIRQC NVVMRFDLAK TVLAYIQSRG RARKPGSDYI
0701: LMVERENVSH AAFLRNARNS EETLRKEAIE RTDLSHLKDT SRLISIDAVP GTVYKVETTG AMVSLNSAVG LIHFYCSQLP GDRYAILRPE FSMEKHEKPG
0801: GHTEYSCRLQ LPCNAPFEIL EGPLCSSMRL AQQAVCLAGC KKLHEMGAFT DMLLPDKGSG QDAEKADQDE EGEPVPGTAR HREFYPEGVA DVLKGDWILS
0901: GKEVCESSKL FHLYMYSVRC EDSGSSKDPF LTEVSDFAVL FGNELDAEVL SMSMDLYVAR AMITKASLVF KGSLDITESQ LSSIKKFHVR LMSIVLDVDV
1001: EPSTTPWDPA KAYLFVPVTD STKGINWELI EKITETTVWD NPLQRARPDV YLGTNERTLG GDRREYGFGK LRNNIGLGQQ KSHPTYGIRG AVASFDVVRA
1101: SGLLPVREAV ERDVSQGKLM MADGCMVADN LIGKIVTAAH SGKRFYVDSI CYDMSADTSF PRKEGYLGPL EYNTYGDYYK QKYGVDLNCK QQPLIKGRGV
1201: SYCKNLLSPR FEQSGESETI LDKTYYVFLP PELCVVHPLS GSLVRGAQRL PSIMRRVESI LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL
1301: GDAYLKWIVS RFLFLKYPQK HEGQLTRMRQ QMSYIQADRF APSRWSAPGV PPVYDEDTKD GGGGSSFFDE EQKQASSEDV FEDGEMEDGE LEGDLSSYRV
1401: LSSKTLADVV EALIGVYYVE GGKAAANHLM KWIGIHVEDD PEETEGAVKP VSVPESVLKS IDFVGLERAL KYEFAEKGLL VEAITHASRP SSGVSCYQRL
1501: EFVGDAVLDH LITRHLFFTY TSLPPGRLTD LRAAAVNNEN FARVAVKHKL HLYLRHGSSA LEKQIREFVK EVLTESSKPG FNSFGLGDCK APKVLGDIVE
1601: SIAGAIFLDS GRDTSAAWKV FQPLLQPMVT PETLPMHPVR ELQERCQQQA EGLEYKASRS GNTATVEVFI DGVQVGVAQN PQKKMAQKLA ARNALAALKE
1701: KEIAESKEKA ANGNAGDESE NGNKKNGNQT FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAASLL
1801: LELLNKTYS
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.