Factsheet for Solyc05g041920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053499	Potato	mitochondrion	89.47	81.79
Solyc07g049150.2.1	Tomato	cytosol	51.13	50.75
Solyc07g049160.2.1	Tomato	mitochondrion	51.88	47.1
VIT_12s0059g01120.t01	Wine grape	cytosol	46.99	43.55
Solyc05g024210.1.1	Tomato	cytosol	54.51	43.15
Bra039552.1-P	Field mustard	cytosol	45.11	42.4
CDY48286	Canola	cytosol	44.36	41.7
CDY22924	Canola	cytosol	43.61	40.99
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	42.86	40.14
CDY09765	Canola	cytosol, nucleus, peroxisome	42.86	40.14
CDX90592	Canola	cytosol, nucleus, peroxisome	42.86	40.14
AT4G15417.2	Thale cress	mitochondrion	42.11	38.75
EES13704	Sorghum	cytosol	41.35	37.8
Os06t0358800-01	Rice	cytosol	42.11	37.46
TraesCS7D01G344100.1	Wheat	cytosol	40.98	35.28
TraesCS7B01G248100.1	Wheat	cytosol	40.6	34.95
TraesCS7A01G336500.1	Wheat	cytosol	40.23	34.29
TraesCS7D01G344200.1	Wheat	cytosol	39.85	33.87
Zm00001d032362_P002	Maize	mitochondrion	41.35	33.43
Solyc10g006210.1.1	Tomato	cytosol	13.16	32.41
HORVU7Hr1G082860.4	Barley	plastid	41.35	30.64
TraesCS2D01G479300.1	Wheat	plastid	32.33	24.86
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	34.21	23.27
Solyc11g008540.1.1	Tomato	mitochondrion	28.2	5.55
Solyc11g008520.1.1	Tomato	nucleus	28.95	5.39
Solyc06g048960.2.1	Tomato	vacuole	27.44	5.22
Solyc08g067210.2.1	Tomato	nucleus	27.44	5.1
Solyc11g008530.1.1	Tomato	mitochondrion	25.19	5.09
Solyc07g005030.2.1	Tomato	cytosol	29.32	5.08
Solyc10g005130.2.1	Tomato	nucleus	31.95	4.5
GSMUA_Achr10P...	Banana	extracellular	2.26	3.21
GSMUA_Achr9P22470_001	Banana	cytosol	1.88	1.31
Solyc08g067200.1.1	Tomato	cytosol	1.13	1.03

Protein Annotations

Gene3D:1.10.1520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029	GO:GO:0090501
GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389	UniProt:K4C0H3	PFAM:PF00636	ScanProsite:PS00517
PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535
SUPFAM:SSF54768	SUPFAM:SSF69065	EnsemblPlantsGene:Solyc05g041920.2	EnsemblPlants:Solyc05g041920.2.1	UniParc:UPI00027664F8	:

Description

No Description!

Coordinates

chr5:-:54237353..54240833

Molecular Weight (calculated)

31018.0 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.388

Length

266 amino acids

Sequence
(BLAST)

001: MDLQLDESEN RDLNKVTLEW KKFVEEVQDA VGYEFKNVNL LYQAFTHPSF HREDKYESYE RLEYVGDSVL NMLIAKFHYF LHPDLAPGQL TRLRAANVDT
101: EKLARVAIRY DFHKYLRHKK PLFKSQVEEF KDAMFEYPLH STGLIDPPKV LADVVESLIG AIYIDCNFSM DITWQVVENL LQPMITPENL ETHPVTKFYE
201: VCQRNGWSVK LIDTWEKTGE IEVFAGEFAG KGKFSGKKLI ALNRAAHNAY CEIVRNLKTT CNDYNF

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.