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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_11s0149g00100.t01 Wine grape cytosol 22.68 32.84
Solyc06g048960.2.1 Tomato vacuole 37.46 7.79
Solyc11g008520.1.1 Tomato nucleus 36.43 7.42
Solyc11g008530.1.1 Tomato mitochondrion 31.96 7.06
Solyc11g008540.1.1 Tomato mitochondrion 31.96 6.88
Solyc10g005130.2.1 Tomato nucleus 41.92 6.46
Solyc07g005030.2.1 Tomato cytosol 28.52 5.4
GSMUA_Achr10P... Banana cytosol, extracellular, nucleus, plastid 1.37 2.78
Solyc12g014410.1.1 Tomato cytosol, nucleus, plastid 2.41 1.79
Solyc05g024210.1.1 Tomato cytosol 1.37 1.19
Solyc08g067210.2.1 Tomato nucleus 5.84 1.19
Solyc05g041920.2.1 Tomato cytosol 1.03 1.13
Solyc10g006210.1.1 Tomato cytosol 0.34 0.93
Solyc07g049150.2.1 Tomato cytosol 0.34 0.37
Solyc07g049160.2.1 Tomato mitochondrion 0.34 0.34
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003824GO:GO:0004518GO:GO:0004525GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016442GO:GO:0016787GO:GO:0030422
GO:GO:0040029GO:GO:0090501GO:GO:0090502InterPro:Helicase_ATP-bdInterPro:IPR014001UniProt:K4CLU6
InterPro:P-loop_NTPasePFAM:PF00270PFscan:PS51192PANTHER:PTHR14950PANTHER:PTHR14950:SF44SMART:SM00487
SUPFAM:SSF52540EnsemblPlantsGene:Solyc08g067200.1EnsemblPlants:Solyc08g067200.1.1UniParc:UPI000276C0A6::
Description
No Description!
Coordinates
chr8:+:56205274..56219881
Molecular Weight (calculated)
33741.5 Da
IEP (calculated)
6.429
GRAVY (calculated)
-0.412
Length
291 amino acids
Sequence
(BLAST)
001: MEEEKQENPL KRNFEAFSSE AEKMDVEKKK IEEFIPREYQ LKVFKVAMRR NTIAVLDTGA GKTNIAVMMI REIGITLRND DEKKLIVFLA PTVHLVHQQY
101: EVIQHHTHLG VQEYYGAKGV DEWNAESWKK ETDDNDVLVM TPQIFLDALR KGYIKFDTVC FLILDECHRA SGNHPYARIM KEFYHLSRKR SKVFGMTASP
201: VIRKGVSSSA DCEEQISELE SLLDSQVYTL ESRVELDEFV PSAKETCKFY DPIVFSNTEL KAKLEFSWSK VKAHMQISYQ IGQCRILLLN N
Best Arabidopsis Sequence Match ( AT1G01040.1 )
(BLAST)
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VLSMSMDLYV ARAMITKASL AFKGSLDITE NQLSSLKKFH VRLMSIVLDV DVEPSTTPWD PAKAYLFVPV TDNTSMEPIK
1101: GINWELVEKI TKTTAWDNPL QRARPDVYLG TNERTLGGDR REYGFGKLRH NIVFGQKSHP TYGIRGAVAS FDVVRASGLL PVRDAFEKEV EEDLSKGKLM
1201: MADGCMVAED LIGKIVTAAH SGKRFYVDSI CYDMSAETSF PRKEGYLGPL EYNTYADYYK QKYGVDLNCK QQPLIKGRGV SYCKNLLSPR FEQSGESETV
1301: LDKTYYVFLP PELCVVHPLS GSLIRGAQRL PSIMRRVESM LLAVQLKNLI SYPIPTSKIL EALTAASCQE TFCYERAELL GDAYLKWVVS RFLFLKYPQK
1401: HEGQLTRMRQ QMVSNMVLYQ FALVKGLQSY IQADRFAPSR WSAPGVPPVF DEDTKDGGSS FFDEEQKPVS EENSDVFEDG EMEDGELEGD LSSYRVLSSK
1501: TLADVVEALI GVYYVEGGKI AANHLMKWIG IHVEDDPDEV DGTLKNVNVP ESVLKSIDFV GLERALKYEF KEKGLLVEAI THASRPSSGV SCYQRLEFVG
1601: DAVLDHLITR HLFFTYTSLP PGRLTDLRAA AVNNENFARV AVKHKLHLYL RHGSSALEKQ IREFVKEVQT ESSKPGFNSF GLGDCKAPKV LGDIVESIAG
1701: AIFLDSGKDT TAAWKVFQPL LQPMVTPETL PMHPVRELQE RCQQQAEGLE YKASRSGNTA TVEVFIDGVQ VGVAQNPQKK MAQKLAARNA LAALKEKEIA
1801: ESKEKHINNG NAGEDQGENE NGNKKNGHQP FTRQTLNDIC LRKNWPMPSY RCVKEGGPAH AKRFTFGVRV NTSDRGWTDE CIGEPMPSVK KAKDSAAVLL
1901: LELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.