Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g076420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Solyc04g076420.2.1 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g008540.1.1 | Tomato | mitochondrion | 80.6 | 85.13 |
| Solyc06g048960.2.1 | Tomato | vacuole | 81.86 | 83.56 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 72.27 | 78.36 |
| KRH11802 | Soybean | cytosol | 12.18 | 61.05 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 58.05 | 59.43 |
| AT3G03300.1 | Thale cress | nucleus | 52.8 | 54.32 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 52.94 | 53.47 |
| CDY50692 | Canola | nucleus | 51.89 | 53.35 |
| Bra031999.1-P | Field mustard | nucleus | 47.69 | 53.33 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 51.75 | 53.24 |
| KRH36816 | Soybean | cytosol | 52.8 | 53.06 |
| Os03t0583900-01 | Rice | nucleus | 44.33 | 44.89 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 43.14 | 43.97 |
| OQU91441 | Sorghum | nucleus | 42.65 | 43.94 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 42.93 | 43.82 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.39 | 43.75 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 23.39 | 42.39 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 42.72 | 41.64 |
| HORVU5Hr1G019300.8 | Barley | plastid | 43.0 | 41.63 |
| Zm00001d013797_P006 | Maize | nucleus | 19.12 | 37.14 |
| Solyc08g067200.1.1 | Tomato | cytosol | 7.42 | 36.43 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 3.64 | 36.36 |
| KXG38096 | Sorghum | plastid | 19.68 | 36.12 |
| Solyc10g006210.1.1 | Tomato | cytosol | 2.73 | 36.11 |
| Solyc05g041920.2.1 | Tomato | cytosol | 5.39 | 28.95 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 5.67 | 27.65 |
| Solyc07g005030.2.1 | Tomato | cytosol | 29.48 | 27.41 |
| Solyc07g049150.2.1 | Tomato | cytosol | 5.11 | 27.24 |
| Solyc05g024210.1.1 | Tomato | cytosol | 6.16 | 26.19 |
| Solyc08g067210.2.1 | Tomato | nucleus | 24.51 | 24.48 |
| Solyc10g005130.2.1 | Tomato | nucleus | 30.53 | 23.09 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 6.09 | 22.25 |
Protein Annotations
Description
No Description!
Coordinates
chr11:+:2690602..2697409
Molecular Weight (calculated)
161283.0 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.111
Length
1428 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSMARANDVV CGNQLVSADP LPFARSYQLE ALEAALKQNT IVYLETGSGK TLIAIMLLRS YAYLLRKPSP YIAVFLVPTV VLVTQQGDAL MMQTDLKVGT
0101: YWGEMGVDFW DAATWKRQVD GHEVLVMTPA ILLSALRHNF LQIDMIKVII FDECHNARGK HPYASIMMEF YHRQLTRESA QLPRIFGMTA SPIKSKGPST
0201: PDSYWRKIHD LENLMHSKVY TCDSEAVLAE YIPFSNPKLK IYKHVDIPST LSKSLAHDME RLKEKHECSI TKSTLSDKSA ASAKRRLSKL YSAFLFCLSE
0301: MGVWLAFKAA EFLSQQETDF FSWGELDVCA QTIVRDFSSD ASKVFSACLP SGPHWSIGGD IQANTDAGYL SSKVHCLVES LLEYRNLKDL RCIIFVERII
0401: TAIVLRSLLN ELLPKLSGWR TECTAGHASV VQSQSRKIQN KIVEEFRKGV VNIIVATSIL EEGLDVQSCN LVIRFDPSAT VCSYIQSRGR ARMQNSDFLL
0501: MVKRYILCNI WKRFHYIYGL IISQFDSNRS GDESTLARMQ NFMASGEMMR QESLRHASEP CSPLVDEMYD EPCYKVESTG AIITLSSSVS LLYFYCSRLP
0601: SDGYFKSYPR CVIDKESRTC TLQLPKSCPL QRIITVQGNS TKILRQLACL EACKELHRVG ALTDNLVPDI VEEEAINKEL ECQIHTVEES KYFPPEFVSH
0701: FGNETEAVYY CYLVELQHET YDDFQLHGII LAVRTKLKCD DEILAFDLDV DRRRRVQVQL KYSKVVTLTS EEIRRCQRFQ VSVFKILLDR DLSKLQDALA
0801: AGQSPIGSAV SDYLLLPSVG KSSEINWKCV NSLLFPSQVL GDKHMDWCST QDRKRSVNTK TGVVCSCLLE NSLVFTPHNG NIYCITGFLD NLDCNSLLNV
0901: RTGESITYRE YYKKRQGIEL CFEEPLLSGK RISKVHNYLQ RNRTQKAKDS TDSSVQLPPE LCFVIMSPIS ISTLYTYSYV PSIMHRIESL VMASHLNSML
1001: LNDCKLNVFI PTAMVLEAVT TRKCLEKFHL ESLETLGDAF LKYAVSTQLF KTHENHHEGL LCVKKSKIIS NAALCKLGCA RKIPGFIRNE AFTLQAWIIP
1101: GDSSQVHSFN EELMTSSDKM YSRIKQKIRS KRVADVVEAL IGAYLSSGGE VAALSLMKWL GMDIDFADAP IQRHFPLNAE KLVNVKYLES LLHYKFHDPS
1201: LLVEALTHGS YMLPEIPRCY QRLEFLGDAV LDYVVTAHLY FKYPGLSPGL ITDLRSASVN NECYAQCAIK ASLHKHILHA SPDLQRQICN TIEDFKNPVS
1301: TFGWEAETTF PKVLADVIES LAGAIFVDSG FNQDTTFQCI RPLLEPLVTP QTLKPHPVRE LSELCDQKGY VKKKDVVSRE NGVAYITVEI DADGVTHKST
1401: CSGRDKIMAK KVACKNVLKS LKECSYNA
0101: YWGEMGVDFW DAATWKRQVD GHEVLVMTPA ILLSALRHNF LQIDMIKVII FDECHNARGK HPYASIMMEF YHRQLTRESA QLPRIFGMTA SPIKSKGPST
0201: PDSYWRKIHD LENLMHSKVY TCDSEAVLAE YIPFSNPKLK IYKHVDIPST LSKSLAHDME RLKEKHECSI TKSTLSDKSA ASAKRRLSKL YSAFLFCLSE
0301: MGVWLAFKAA EFLSQQETDF FSWGELDVCA QTIVRDFSSD ASKVFSACLP SGPHWSIGGD IQANTDAGYL SSKVHCLVES LLEYRNLKDL RCIIFVERII
0401: TAIVLRSLLN ELLPKLSGWR TECTAGHASV VQSQSRKIQN KIVEEFRKGV VNIIVATSIL EEGLDVQSCN LVIRFDPSAT VCSYIQSRGR ARMQNSDFLL
0501: MVKRYILCNI WKRFHYIYGL IISQFDSNRS GDESTLARMQ NFMASGEMMR QESLRHASEP CSPLVDEMYD EPCYKVESTG AIITLSSSVS LLYFYCSRLP
0601: SDGYFKSYPR CVIDKESRTC TLQLPKSCPL QRIITVQGNS TKILRQLACL EACKELHRVG ALTDNLVPDI VEEEAINKEL ECQIHTVEES KYFPPEFVSH
0701: FGNETEAVYY CYLVELQHET YDDFQLHGII LAVRTKLKCD DEILAFDLDV DRRRRVQVQL KYSKVVTLTS EEIRRCQRFQ VSVFKILLDR DLSKLQDALA
0801: AGQSPIGSAV SDYLLLPSVG KSSEINWKCV NSLLFPSQVL GDKHMDWCST QDRKRSVNTK TGVVCSCLLE NSLVFTPHNG NIYCITGFLD NLDCNSLLNV
0901: RTGESITYRE YYKKRQGIEL CFEEPLLSGK RISKVHNYLQ RNRTQKAKDS TDSSVQLPPE LCFVIMSPIS ISTLYTYSYV PSIMHRIESL VMASHLNSML
1001: LNDCKLNVFI PTAMVLEAVT TRKCLEKFHL ESLETLGDAF LKYAVSTQLF KTHENHHEGL LCVKKSKIIS NAALCKLGCA RKIPGFIRNE AFTLQAWIIP
1101: GDSSQVHSFN EELMTSSDKM YSRIKQKIRS KRVADVVEAL IGAYLSSGGE VAALSLMKWL GMDIDFADAP IQRHFPLNAE KLVNVKYLES LLHYKFHDPS
1201: LLVEALTHGS YMLPEIPRCY QRLEFLGDAV LDYVVTAHLY FKYPGLSPGL ITDLRSASVN NECYAQCAIK ASLHKHILHA SPDLQRQICN TIEDFKNPVS
1301: TFGWEAETTF PKVLADVIES LAGAIFVDSG FNQDTTFQCI RPLLEPLVTP QTLKPHPVRE LSELCDQKGY VKKKDVVSRE NGVAYITVEI DADGVTHKST
1401: CSGRDKIMAK KVACKNVLKS LKECSYNA
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.