Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | KXG22802 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | OQU82704 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 83.91 | 79.39 |
| Os03t0583900-01 | Rice | nucleus | 67.89 | 66.74 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 67.32 | 66.69 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 67.17 | 66.45 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 64.72 | 66.4 |
| HORVU5Hr1G019300.8 | Barley | plastid | 66.74 | 62.71 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 6.35 | 61.54 |
| KXG38096 | Sorghum | plastid | 30.74 | 54.76 |
| KRH11802 | Soybean | cytosol | 9.6 | 46.67 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 45.96 | 45.66 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 43.65 | 44.75 |
| Solyc06g048960.2.1 | Tomato | vacuole | 44.88 | 44.46 |
| PGSC0003DMT400042918 | Potato | nucleus | 35.21 | 44.2 |
| AT3G03300.1 | Thale cress | nucleus | 43.22 | 43.16 |
| Bra031999.1-P | Field mustard | nucleus | 39.61 | 42.99 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 42.86 | 42.8 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 43.58 | 42.72 |
| Solyc11g008520.1.1 | Tomato | nucleus | 43.94 | 42.65 |
| KRH36816 | Soybean | cytosol | 43.58 | 42.51 |
| CDY50692 | Canola | nucleus | 42.5 | 42.4 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 40.12 | 42.22 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 19.99 | 35.15 |
| EES13704 | Sorghum | cytosol | 5.99 | 28.52 |
| OQU81938 | Sorghum | mitochondrion | 31.39 | 26.13 |
| OQU91611 | Sorghum | nucleus, plastid | 30.38 | 25.72 |
| KXG33962 | Sorghum | nucleus | 30.38 | 25.41 |
| KXG40313 | Sorghum | cytosol, nucleus, plastid | 32.76 | 23.54 |
| KXG21693 | Sorghum | plastid | 5.92 | 18.55 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| UniProt:A0A1Z5S678 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0031047 | GO:GO:0090501 | GO:GO:0090502 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 |
| InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | EnsemblPlants:OQU91441 | ProteinID:OQU91441 |
| ProteinID:OQU91441.1 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | EnsemblPlantsGene:SORBI_3001G180000 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 |
| UniParc:UPI000B423A43 | InterPro:dsRBD_dom | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:15260659..15277497
Molecular Weight (calculated)
156563.0 Da
IEP (calculated)
6.822
GRAVY (calculated)
-0.126
Length
1386 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEEDPLPPC DPQTQARWYQ LEALERALAG NTLVFLETGA GKTLIAVLLL RRFANRIRSS PPPCFAVFLV PTVVLVSQQA RVVRAHTDLT VAEFFGEMGV
0101: DFWNADKWRD MVDGAEVLVM TPQILLDNLR HSFFRLRDIP LLIFDECHHA TGNSPYACIF KEFYHPQLNS RPSDPIPRIF GMTASLINSK DLARDKYSMK
0201: ISELENLMNA KVYTVASESE LLQYIPFATT RIIEYDDYIV KSELYSHTIR CLDKLEAKHL EILKGKLHGS YLENAEKRIK KLNAMFLYCI SDLGVWLAAK
0301: AAEILQSNKE SCVSFWGEKL DDEVEGFIRN YIGDVNNELS EIILKMTKRG LQRHIGEDFD ADLQDGLLKS KVYFLIKSLL EYRHVQDLRC IVFVKRVITS
0401: IVLEALLSTI NQMSGWSVRY MAGKNFGLQY QSRNTHVEIV DSFRSGKVHL IIATQILEEG LDVPSCNLII RFDQAATVCS FIQSRGRARM QNSHYVLLIR
0501: RGDANALSKT EEFLESGQIM REESQRLEST FYQPLPNTLC NEEFYGVQST GAIVTLNSSV QLIYFFCSKL PSDEYFNPLP RFNIDKALGT CTLHLPMSSP
0601: VQTIYAEGEI SIIKRVVCLN ACRELHAVGA LTDYLLPESS VPCEDEPDIV VDKYKEEQPD YFPEQLMDNW LSFCHRGLYY CYKISLEGCS ETTTPAEIVL
0701: AVKCDLGSDF ISTTFKLWGV QDYLSFTIRY VGVIHLNQEQ VIVARRFQTR ILSLLISKDL SEDGNSIKSL LEMQVSSGAV YLLLPVVSGK IDWCSIKFSS
0801: SEMHEDTIMD SRHSHSCKDT GLLQTKGGPF CPCMLQNSIV STPHNGMLYA VSGLLLDLNA NSPMRESVLS YKTHFKESHG LDLKCEDQPL LRASKLVKVR
0901: NILHERNYKK EKESTNVFEL PPELCIVVMA PVSANTLRCF TFIPSIMYRI QCMLLSVNLK TQLGPSMKQF DIPALKVLEA LTAKKCKEEF SQESLETLGD
1001: SFLKYITTQH LFSKYKHQHE GMLTKMKKNL ISNAALCQLA CSNNLVGYIR SETFNPETWI IPGVGNDSCG RSLRKLKSKR IADSVEALIG AYLSAAGEQA
1101: AYLFLKSLGM DIEFHKMPVE RKITINAENF INLRSLELML DYNFSDPSLL LEALTHGSYQ IAGTTACYQR LEFLGDAVLD HIFTDYFYHQ YPECTPELLT
1201: DLRSASVNNS CYAHAAVKAG LHKHILHSSS ALHKKMADYL DKFEQSFSGP SHGWEAGICL PKVLGDVIES IAGAIYIDTK NDKKVVWRKM KRLLEPLATP
1301: DTLEIDPVKE LHEFCDPKTC SIKYTVARED RVTSVAVEVQ TKGTTYKATR TGLTKRDAKK LAAKSVLKDM KAANSTQHFA NGISCT
0101: DFWNADKWRD MVDGAEVLVM TPQILLDNLR HSFFRLRDIP LLIFDECHHA TGNSPYACIF KEFYHPQLNS RPSDPIPRIF GMTASLINSK DLARDKYSMK
0201: ISELENLMNA KVYTVASESE LLQYIPFATT RIIEYDDYIV KSELYSHTIR CLDKLEAKHL EILKGKLHGS YLENAEKRIK KLNAMFLYCI SDLGVWLAAK
0301: AAEILQSNKE SCVSFWGEKL DDEVEGFIRN YIGDVNNELS EIILKMTKRG LQRHIGEDFD ADLQDGLLKS KVYFLIKSLL EYRHVQDLRC IVFVKRVITS
0401: IVLEALLSTI NQMSGWSVRY MAGKNFGLQY QSRNTHVEIV DSFRSGKVHL IIATQILEEG LDVPSCNLII RFDQAATVCS FIQSRGRARM QNSHYVLLIR
0501: RGDANALSKT EEFLESGQIM REESQRLEST FYQPLPNTLC NEEFYGVQST GAIVTLNSSV QLIYFFCSKL PSDEYFNPLP RFNIDKALGT CTLHLPMSSP
0601: VQTIYAEGEI SIIKRVVCLN ACRELHAVGA LTDYLLPESS VPCEDEPDIV VDKYKEEQPD YFPEQLMDNW LSFCHRGLYY CYKISLEGCS ETTTPAEIVL
0701: AVKCDLGSDF ISTTFKLWGV QDYLSFTIRY VGVIHLNQEQ VIVARRFQTR ILSLLISKDL SEDGNSIKSL LEMQVSSGAV YLLLPVVSGK IDWCSIKFSS
0801: SEMHEDTIMD SRHSHSCKDT GLLQTKGGPF CPCMLQNSIV STPHNGMLYA VSGLLLDLNA NSPMRESVLS YKTHFKESHG LDLKCEDQPL LRASKLVKVR
0901: NILHERNYKK EKESTNVFEL PPELCIVVMA PVSANTLRCF TFIPSIMYRI QCMLLSVNLK TQLGPSMKQF DIPALKVLEA LTAKKCKEEF SQESLETLGD
1001: SFLKYITTQH LFSKYKHQHE GMLTKMKKNL ISNAALCQLA CSNNLVGYIR SETFNPETWI IPGVGNDSCG RSLRKLKSKR IADSVEALIG AYLSAAGEQA
1101: AYLFLKSLGM DIEFHKMPVE RKITINAENF INLRSLELML DYNFSDPSLL LEALTHGSYQ IAGTTACYQR LEFLGDAVLD HIFTDYFYHQ YPECTPELLT
1201: DLRSASVNNS CYAHAAVKAG LHKHILHSSS ALHKKMADYL DKFEQSFSGP SHGWEAGICL PKVLGDVIES IAGAIYIDTK NDKKVVWRKM KRLLEPLATP
1301: DTLEIDPVKE LHEFCDPKTC SIKYTVARED RVTSVAVEVQ TKGTTYKATR TGLTKRDAKK LAAKSVLKDM KAANSTQHFA NGISCT
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.