Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 2
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g076420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Solyc04g076420.2.1 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g008540.1.1 | Tomato | mitochondrion | 84.43 | 82.25 |
| Solyc06g048960.2.1 | Tomato | vacuole | 81.4 | 76.63 |
| Solyc11g008520.1.1 | Tomato | nucleus | 78.36 | 72.27 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 56.19 | 53.05 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 53.23 | 49.58 |
| KRH36816 | Soybean | cytosol | 52.62 | 48.77 |
| AT3G03300.1 | Thale cress | nucleus | 50.57 | 47.98 |
| Bra031999.1-P | Field mustard | nucleus | 45.86 | 47.3 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 49.81 | 47.26 |
| CDY50692 | Canola | nucleus | 49.81 | 47.23 |
| KRH11802 | Soybean | cytosol | 10.17 | 47.02 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 24.91 | 41.62 |
| Os03t0583900-01 | Rice | nucleus | 43.36 | 40.5 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 42.9 | 40.33 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 42.67 | 40.17 |
| OQU91441 | Sorghum | nucleus | 42.22 | 40.12 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.0 | 39.97 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 42.22 | 37.95 |
| HORVU5Hr1G019300.8 | Barley | plastid | 42.14 | 37.63 |
| Solyc10g006210.1.1 | Tomato | cytosol | 2.96 | 36.11 |
| Zm00001d013797_P006 | Maize | nucleus | 19.89 | 35.65 |
| KXG38096 | Sorghum | plastid | 20.43 | 34.58 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 3.57 | 32.87 |
| Solyc08g067200.1.1 | Tomato | cytosol | 7.06 | 31.96 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 5.92 | 26.62 |
| Solyc07g049150.2.1 | Tomato | cytosol | 5.32 | 26.12 |
| Solyc07g005030.2.1 | Tomato | cytosol | 30.45 | 26.11 |
| Solyc05g041920.2.1 | Tomato | cytosol | 5.09 | 25.19 |
| Solyc05g024210.1.1 | Tomato | cytosol | 6.23 | 24.4 |
| Solyc08g067210.2.1 | Tomato | nucleus | 26.04 | 23.99 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 6.45 | 21.74 |
| Solyc10g005130.2.1 | Tomato | nucleus | 30.75 | 21.45 |
Protein Annotations
Description
No Description!
Coordinates
chr11:+:2700331..2706663
Molecular Weight (calculated)
149405.0 Da
IEP (calculated)
7.557
GRAVY (calculated)
-0.126
Length
1317 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLRSYASLL RKPSPYIAVF LVPTVVLVTQ QGDALMLHTD LKVGKYWGEK GVDYWNAATW QQLVDDHEVL VMTPAILHAA LRHSFLQMGM IKVIIFDECH
0101: NARGKHPYAS IMMEFYHRQL TRENAQLPRI FGMTASPIKS KGSSTADSYW QKIRDLENLM HSKVYTCSSE SVLADYIPFS NPKLKIYEHV DIPSKLFQTL
0201: VHDLERLKEK HECLISQSNL SFMRDGSARR RLSKLHSNFL FCLSEMGAWL AFKSCEENDF LSSDDACVRD FCLGASTIFS AHLPSGPHWS IGKDIQANVD
0301: AGYLSSKVNC LLESLLEYRD RKDLRCIIFV ERIITAIVLR SLLNELFLER SGWRTEVTTG RITTFKQNKI VEEFRKGLVN IIVATSILEE GLDVRSCNLV
0401: IRFDPSTTVC SFIQSRGRAR MQNSDFILMV RKGDDATLTR MQNYKASVEI MRQESLRHAS IPCSTLHDEL YDECYKVEST GAVVTLSSSV SLLDFYCSRL
0501: PSDGYFKPDP TYVINEETET CTLQLPKSSP LQGIISVQGK RKILKQLACL EACKQLHRVG ALTDNLVPDI VEEETINKEL ECKIKIVEQS LYYPSEFVSH
0601: CGNESEAVYY CYLVELPHDS YNDSQLHGII LAVRTKLKFD DEILAFDLDV DRRGRLKVQL NYRKVVIFTS EEIRRCQRFQ VSVFRILRDP DLSKLQEVLA
0701: AVQSPIGSAV SDYLLLPSVG TPPEINWQYV NSLLFPSQVL GDKHMDWCST QGRRCSVNTI SEVVCSCMLE NSLVCTPHNG RIYCINGFLE NLDCNSLMGV
0801: RSEESITYRE HYRKRYGINI CSEEVPLLRG KHISKEAKDS SVALPPELCS LIMSPLFIST LNTYSYVPSI MHRIESLIMA SNLKKMHLDH CTQNVVIPTA
0901: KILEAMTTKN CLEKFHLESL ETLGDSFLKY AASIKLFKTY ENDHQGLLTV KRKQIISNAT LCRLGCARKM PGFIRNKPFV LKAWIIPGDN SQVHNFDEEL
1001: LTSSVKMYSR GKQKIKSKIM ADVVEALIGA YLSSGGEVAA LSFMKWLGVD INFVDAPTSR HLPVNAEKLV NVRYLESLLH YKFNDPSLLV EALSHGSCML
1101: PDIPRCYKRL EFLGDAVLDY VVTTHLYFKY PGLTPGLITD LRSASVNNEC YALSAVKAGL HDHILYDLQV LQRHISSTVE DFKKLNLVST FGWEAETTYP
1201: KVLADVIESL AGAIFVDSGF NQDTTFLCIR PLLEPLITPQ TLKVHPAREL RELCHQKGYI KQKNVVFREN GIVYVTVEVE ANGVIHKDSN SGRNQKMAEK
1301: VASKYLLKSL KEYPYNP
0101: NARGKHPYAS IMMEFYHRQL TRENAQLPRI FGMTASPIKS KGSSTADSYW QKIRDLENLM HSKVYTCSSE SVLADYIPFS NPKLKIYEHV DIPSKLFQTL
0201: VHDLERLKEK HECLISQSNL SFMRDGSARR RLSKLHSNFL FCLSEMGAWL AFKSCEENDF LSSDDACVRD FCLGASTIFS AHLPSGPHWS IGKDIQANVD
0301: AGYLSSKVNC LLESLLEYRD RKDLRCIIFV ERIITAIVLR SLLNELFLER SGWRTEVTTG RITTFKQNKI VEEFRKGLVN IIVATSILEE GLDVRSCNLV
0401: IRFDPSTTVC SFIQSRGRAR MQNSDFILMV RKGDDATLTR MQNYKASVEI MRQESLRHAS IPCSTLHDEL YDECYKVEST GAVVTLSSSV SLLDFYCSRL
0501: PSDGYFKPDP TYVINEETET CTLQLPKSSP LQGIISVQGK RKILKQLACL EACKQLHRVG ALTDNLVPDI VEEETINKEL ECKIKIVEQS LYYPSEFVSH
0601: CGNESEAVYY CYLVELPHDS YNDSQLHGII LAVRTKLKFD DEILAFDLDV DRRGRLKVQL NYRKVVIFTS EEIRRCQRFQ VSVFRILRDP DLSKLQEVLA
0701: AVQSPIGSAV SDYLLLPSVG TPPEINWQYV NSLLFPSQVL GDKHMDWCST QGRRCSVNTI SEVVCSCMLE NSLVCTPHNG RIYCINGFLE NLDCNSLMGV
0801: RSEESITYRE HYRKRYGINI CSEEVPLLRG KHISKEAKDS SVALPPELCS LIMSPLFIST LNTYSYVPSI MHRIESLIMA SNLKKMHLDH CTQNVVIPTA
0901: KILEAMTTKN CLEKFHLESL ETLGDSFLKY AASIKLFKTY ENDHQGLLTV KRKQIISNAT LCRLGCARKM PGFIRNKPFV LKAWIIPGDN SQVHNFDEEL
1001: LTSSVKMYSR GKQKIKSKIM ADVVEALIGA YLSSGGEVAA LSFMKWLGVD INFVDAPTSR HLPVNAEKLV NVRYLESLLH YKFNDPSLLV EALSHGSCML
1101: PDIPRCYKRL EFLGDAVLDY VVTTHLYFKY PGLTPGLITD LRSASVNNEC YALSAVKAGL HDHILYDLQV LQRHISSTVE DFKKLNLVST FGWEAETTYP
1201: KVLADVIESL AGAIFVDSGF NQDTTFLCIR PLLEPLITPQ TLKVHPAREL RELCHQKGYI KQKNVVFREN GIVYVTVEVE ANGVIHKDSN SGRNQKMAEK
1301: VASKYLLKSL KEYPYNP
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.