Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 97.93 | 94.57 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 97.26 | 93.79 |
| HORVU5Hr1G019300.8 | Barley | plastid | 93.41 | 85.56 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 7.18 | 67.83 |
| Os03t0583900-01 | Rice | nucleus | 70.39 | 67.45 |
| OQU91441 | Sorghum | nucleus | 66.4 | 64.72 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 67.06 | 61.84 |
| Zm00001d013797_P006 | Maize | nucleus | 31.68 | 58.23 |
| KXG38096 | Sorghum | plastid | 32.86 | 57.07 |
| KRH11802 | Soybean | cytosol | 9.7 | 45.96 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 45.89 | 44.44 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 43.6 | 43.57 |
| Solyc06g048960.2.1 | Tomato | vacuole | 44.86 | 43.32 |
| Bra031999.1-P | Field mustard | nucleus | 40.34 | 42.68 |
| PGSC0003DMT400042918 | Potato | nucleus | 34.79 | 42.57 |
| AT3G03300.1 | Thale cress | nucleus | 43.67 | 42.51 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 43.38 | 42.22 |
| CDY50692 | Canola | nucleus | 43.23 | 42.04 |
| KRH36816 | Soybean | cytosol | 43.67 | 41.52 |
| Solyc11g008520.1.1 | Tomato | nucleus | 43.75 | 41.39 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 43.15 | 41.23 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 39.97 | 41.0 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 19.84 | 34.01 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 6.81 | 29.77 |
| TraesCS2B01G383300.2 | Wheat | plastid | 30.87 | 24.26 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 29.9 | 24.09 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 17.25 | 22.49 |
| TraesCS7B01G428200.1 | Wheat | mitochondrion | 5.92 | 21.92 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 31.38 | 21.4 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 5.92 | 21.39 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006396 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0016787 |
| GO:GO:0016891 | GO:GO:0040029 | GO:GO:0051214 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 |
| InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 |
| InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS5B01G079900 |
| EnsemblPlants:TraesCS5B01G079900.1 | TIGR:cd00046 | TIGR:cd00048 | TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:97491516..97517913
Molecular Weight (calculated)
152489.0 Da
IEP (calculated)
8.005
GRAVY (calculated)
-0.169
Length
1351 amino acids
Sequence
(BLAST)
(BLAST)
0001: MCVRACRYQL EALERAMSGN TVAFLDTGAG KTLIAGLLLR SYAHRVRKPA RDFAVFLVPT RVLVEQQARV IEAHTDLRVS KFTGDMGVDF WDAAIWRRVI
0101: LLDNLRHSFF SLQDIALLIF DECHRAKGNS PYACILKEFY HPVMNSRPRG PLPRIFGMTA SPTDSKNLLQ ESYSKRIVEL ENLLNSKVYT VDNESALSEY
0201: IPFATTRIVQ YDDYIIPSNS HNHIKTCLDR LQEKHLEVLK TNLHGLSRKN AKKGISKLHK AFLYCTANLG VWLAAKAAEI HSTTNEQFLS FWGEELDKNV
0301: EGFVRSYSEE VYRELSCFSK RGHIGEDFAA DLQDGLLTPK VHCLVQFLLE YRELLQALYW SLLSTINQMP GWIVKHIAGN RPMFHNQSRN KQTEIVDAFK
0401: GGKVHIIVTT QVLEEGLNVP GCHLVIRFDP PTTGRSFIQS RGRARMPNSD YVLLVRRGDA EAHSKTLKFL ASGQIMREAS LKLASTMCQP LEDTLLQEEY
0501: YRVESTGATV TMNSSVQLIY FFCSKLPSDE YFKPLPRFII DKELRTCTLY LPNSSPVQAV NTEGEVSALK KAVCLKACRE LHAVGALTDY LLPEFGFPCE
0601: EEPDIVVEKY QHEQPEYFPE EFVYNWLSFS RLGIYYCYKI SVEGCLKTTY CPNDILLAVK CDLGPDFVST SLKLFGEQDN ASVAMKYVGI IHLNQEQVVM
0701: ARRFQTTILS LLINKDHSEV INAVKYSHEM QVSIGIVYLL LPLVSGKVDW CSIKFSTSQV YDASNKDNRH CHSCKQVDLL QTKDGPLCRC MLQNSIVCTP
0801: HNSKFYAVNG FLDLNSKSLL HLRDGSALTY INYFNTRHGL SLTHENQPLL AARNPVEVRN FLQKRHYKNK KESRTSHGVE LPPELCRLVI SPVSNNTLYS
0901: FSVIPSVMYR IQCLLLSAKL KNQLGPTMQQ FAIPALKILE AVTTKECQEE FSQESLETLG DSFLKYVATQ HLYGKYKLQH EGTLTKMKKN LISNAALCQL
1001: ACNNNLVGYI QGEEFNPKGW IIPGLGYDMC GNSKISFLSS NDMHTLRKMS VRSKRIADTV EALIGAYLGA AGEQAAFVFL KSLGLDIEFH SNIPLERKIV
1101: LKYEKFINVR SLEMILAYDF KDTSLLVEAL THGSYQTAGA TACYQRLEFL GDAVLDHLFT IYFYNQYPEC TPELLTDLRS ASVNNNCYAH AAAKAGLNKH
1201: ILHSSLQLHG RMAYYFENFK QPFTGPSHGW EAGIGLPKVL GDVIESLAGA IYLDSKYDKE VVWKSMKQLL EPLATPETVE RDPVKLLQEF CARRSYSSSY
1301: TKAQKDGVSS VVAEVQVEGT TYSATETGPD KIVAKKLAAK SLLNNLKAIV P
0101: LLDNLRHSFF SLQDIALLIF DECHRAKGNS PYACILKEFY HPVMNSRPRG PLPRIFGMTA SPTDSKNLLQ ESYSKRIVEL ENLLNSKVYT VDNESALSEY
0201: IPFATTRIVQ YDDYIIPSNS HNHIKTCLDR LQEKHLEVLK TNLHGLSRKN AKKGISKLHK AFLYCTANLG VWLAAKAAEI HSTTNEQFLS FWGEELDKNV
0301: EGFVRSYSEE VYRELSCFSK RGHIGEDFAA DLQDGLLTPK VHCLVQFLLE YRELLQALYW SLLSTINQMP GWIVKHIAGN RPMFHNQSRN KQTEIVDAFK
0401: GGKVHIIVTT QVLEEGLNVP GCHLVIRFDP PTTGRSFIQS RGRARMPNSD YVLLVRRGDA EAHSKTLKFL ASGQIMREAS LKLASTMCQP LEDTLLQEEY
0501: YRVESTGATV TMNSSVQLIY FFCSKLPSDE YFKPLPRFII DKELRTCTLY LPNSSPVQAV NTEGEVSALK KAVCLKACRE LHAVGALTDY LLPEFGFPCE
0601: EEPDIVVEKY QHEQPEYFPE EFVYNWLSFS RLGIYYCYKI SVEGCLKTTY CPNDILLAVK CDLGPDFVST SLKLFGEQDN ASVAMKYVGI IHLNQEQVVM
0701: ARRFQTTILS LLINKDHSEV INAVKYSHEM QVSIGIVYLL LPLVSGKVDW CSIKFSTSQV YDASNKDNRH CHSCKQVDLL QTKDGPLCRC MLQNSIVCTP
0801: HNSKFYAVNG FLDLNSKSLL HLRDGSALTY INYFNTRHGL SLTHENQPLL AARNPVEVRN FLQKRHYKNK KESRTSHGVE LPPELCRLVI SPVSNNTLYS
0901: FSVIPSVMYR IQCLLLSAKL KNQLGPTMQQ FAIPALKILE AVTTKECQEE FSQESLETLG DSFLKYVATQ HLYGKYKLQH EGTLTKMKKN LISNAALCQL
1001: ACNNNLVGYI QGEEFNPKGW IIPGLGYDMC GNSKISFLSS NDMHTLRKMS VRSKRIADTV EALIGAYLGA AGEQAAFVFL KSLGLDIEFH SNIPLERKIV
1101: LKYEKFINVR SLEMILAYDF KDTSLLVEAL THGSYQTAGA TACYQRLEFL GDAVLDHLFT IYFYNQYPEC TPELLTDLRS ASVNNNCYAH AAAKAGLNKH
1201: ILHSSLQLHG RMAYYFENFK QPFTGPSHGW EAGIGLPKVL GDVIESLAGA IYLDSKYDKE VVWKSMKQLL EPLATPETVE RDPVKLLQEF CARRSYSSSY
1301: TKAQKDGVSS VVAEVQVEGT TYSATETGPD KIVAKKLAAK SLLNNLKAIV P
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.