Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G086900.1 | Wheat | cytosol | 98.86 | 98.72 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 94.57 | 97.93 |
| HORVU5Hr1G019300.8 | Barley | plastid | 94.35 | 89.49 |
| Os03t0583900-01 | Rice | nucleus | 70.62 | 70.07 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 6.93 | 67.83 |
| OQU91441 | Sorghum | nucleus | 66.69 | 67.32 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 67.62 | 64.57 |
| Zm00001d013797_P006 | Maize | nucleus | 30.74 | 58.5 |
| KXG38096 | Sorghum | plastid | 31.95 | 57.45 |
| KRH11802 | Soybean | cytosol | 9.79 | 48.07 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 46.1 | 46.24 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 43.6 | 45.12 |
| Solyc06g048960.2.1 | Tomato | vacuole | 44.82 | 44.82 |
| Bra031999.1-P | Field mustard | nucleus | 40.24 | 44.09 |
| AT3G03300.1 | Thale cress | nucleus | 43.53 | 43.88 |
| PGSC0003DMT400042918 | Potato | nucleus | 34.52 | 43.75 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 43.17 | 43.52 |
| CDY50692 | Canola | nucleus | 43.03 | 43.34 |
| KRH36816 | Soybean | cytosol | 43.75 | 43.07 |
| Solyc11g008520.1.1 | Tomato | nucleus | 43.82 | 42.93 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 40.17 | 42.67 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 43.1 | 42.65 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 19.23 | 34.14 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 6.93 | 31.09 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 31.24 | 26.93 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 30.09 | 25.88 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 5.79 | 25.55 |
| TraesCS3A01G415400.2 | Wheat | nucleus | 29.95 | 24.97 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 31.81 | 22.57 |
| TraesCS7A01G512700.1 | Wheat | mitochondrion | 5.79 | 22.31 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 5.79 | 21.83 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006396 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0016787 |
| GO:GO:0016891 | GO:GO:0040029 | GO:GO:0051214 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 |
| InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 |
| InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS5A01G073600 |
| EnsemblPlants:TraesCS5A01G073600.1 | TIGR:cd00046 | TIGR:cd00048 | TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:85819798..85860235
Molecular Weight (calculated)
157349.0 Da
IEP (calculated)
7.424
GRAVY (calculated)
-0.152
Length
1399 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGDAATAAVA ADAAATEEAH KEDPEIVARW YQLEALERAM SGNTVAFLDT GAGKTLIAGL LLRAYAHRVR KPARDYAVFL VPTRVLVEQQ ARVIEAHTDL
0101: RVSKFTGDMG VDFWNAAIWR RVVDDAEVLV MTPQILLDNL RHSFFSLQDI ALLIFDECHR AKGNSPYACI LKEFYHPVMN SRPRGPLPRI FGMTASPTDS
0201: KNLLQESYSK RIVELENLLN SKVYTVDNES ALSEYIPFAT TRIVQYDDYI IPSNSHNHIK SCLDKLQEKH LEVLKANLHG LSRKNAKKGI SKLHKAFLYC
0301: TANLGVWLAA KAAEIHSTTN EQFLSFWGEE LDKNVEGFVR SYSEEVYREL SCFSKRGHIG EDFAADLQDG LLTPKVHCLV QFLLEYRHMQ DLRCIVFVER
0401: VVTSIVLESL LSTINQMPGW IIKHIAGNRP MFHNQSRNKQ TEIVDAFKGG KVHIIVTTQV LEEGLNVPGC HLVIRFDPPT TGRSFIQSRG RARMPNSDYV
0501: LLVRRGDAEA HSKTLKFLAS GQIMREASLK LASTMCQPLE DTLLQEEYYR VESTGATVTM NSSVQLIYFF CSKLPSDEYF KPLPRFIIDK ELRTCTLYLP
0601: NSSPVQAVNT EGEVSALKKA VCLKACRELH AVGALTDYLL PEFGFPCEEE PDIVVEKYQH EQPEYFPEEF VYNWLSFSRL GIYYCYKISV EGCLKTTYCP
0701: NDILLAVKCD LGPDFVSTSL KLFGEQDNAS VAMKYVGIIH LNQEQVVMAR RFQTTILSLL INKDHSEVIN AVKYSHEMQV SIGIVYLLLP LVSGKVDWCS
0801: IKFSTSQVYD ASNKDIRHCH SCKQVDLLQT KDGPLCRCML QNSIVCTPHN SKFYAVNGFL DLNSKSLLHL RDGSALTYIN YFNTRHGLSL THENQPLLAA
0901: RNPVEVRNFL QKRHYKNKKE SRTSHGVELP PELCRLVMSP VSNNTLYSFS VIPSVMYRIQ CLLLSAKLKD QLGPTMQQFA IPALKILEAV TTKECQEEFS
1001: QESLETLGDS FLKYVATQHL YGKYKLQHEG TLTKMKKNLI SNAALCQLAC SNNLVGYIQG EEFNPKGWII PGLGYDMCGN SKISFLSSND MHTLRKMSVR
1101: SKRIADTVEA LIGAYLGAAG EQAAFVFLKS LGLDIEFHSN IPLERKIVLK SEKFINVRSL EMILGYEFKD TSLLVEALTH GSYQTAGATA CYQRLEFLGD
1201: AVLDHLFTIY FYNQYPECTP ELLTDLRSAS VNNNCYAHAA AKAGLNKHIL HSSLQLHGRM AYYFENFKQP FTGPSHGWEA GIGLPKVLGD VIESLAGAIY
1301: LDSKYDKEVV WKSMKQLLEP LATPETVERD PVKLLQEFCA RRSYSSSYTK AHKDGVSSVV AEVQVEGTTY TATETGPDKI VAKKLAAKSL LNNLKAIVP
0101: RVSKFTGDMG VDFWNAAIWR RVVDDAEVLV MTPQILLDNL RHSFFSLQDI ALLIFDECHR AKGNSPYACI LKEFYHPVMN SRPRGPLPRI FGMTASPTDS
0201: KNLLQESYSK RIVELENLLN SKVYTVDNES ALSEYIPFAT TRIVQYDDYI IPSNSHNHIK SCLDKLQEKH LEVLKANLHG LSRKNAKKGI SKLHKAFLYC
0301: TANLGVWLAA KAAEIHSTTN EQFLSFWGEE LDKNVEGFVR SYSEEVYREL SCFSKRGHIG EDFAADLQDG LLTPKVHCLV QFLLEYRHMQ DLRCIVFVER
0401: VVTSIVLESL LSTINQMPGW IIKHIAGNRP MFHNQSRNKQ TEIVDAFKGG KVHIIVTTQV LEEGLNVPGC HLVIRFDPPT TGRSFIQSRG RARMPNSDYV
0501: LLVRRGDAEA HSKTLKFLAS GQIMREASLK LASTMCQPLE DTLLQEEYYR VESTGATVTM NSSVQLIYFF CSKLPSDEYF KPLPRFIIDK ELRTCTLYLP
0601: NSSPVQAVNT EGEVSALKKA VCLKACRELH AVGALTDYLL PEFGFPCEEE PDIVVEKYQH EQPEYFPEEF VYNWLSFSRL GIYYCYKISV EGCLKTTYCP
0701: NDILLAVKCD LGPDFVSTSL KLFGEQDNAS VAMKYVGIIH LNQEQVVMAR RFQTTILSLL INKDHSEVIN AVKYSHEMQV SIGIVYLLLP LVSGKVDWCS
0801: IKFSTSQVYD ASNKDIRHCH SCKQVDLLQT KDGPLCRCML QNSIVCTPHN SKFYAVNGFL DLNSKSLLHL RDGSALTYIN YFNTRHGLSL THENQPLLAA
0901: RNPVEVRNFL QKRHYKNKKE SRTSHGVELP PELCRLVMSP VSNNTLYSFS VIPSVMYRIQ CLLLSAKLKD QLGPTMQQFA IPALKILEAV TTKECQEEFS
1001: QESLETLGDS FLKYVATQHL YGKYKLQHEG TLTKMKKNLI SNAALCQLAC SNNLVGYIQG EEFNPKGWII PGLGYDMCGN SKISFLSSND MHTLRKMSVR
1101: SKRIADTVEA LIGAYLGAAG EQAAFVFLKS LGLDIEFHSN IPLERKIVLK SEKFINVRSL EMILGYEFKD TSLLVEALTH GSYQTAGATA CYQRLEFLGD
1201: AVLDHLFTIY FYNQYPECTP ELLTDLRSAS VNNNCYAHAA AKAGLNKHIL HSSLQLHGRM AYYFENFKQP FTGPSHGWEA GIGLPKVLGD VIESLAGAIY
1301: LDSKYDKEVV WKSMKQLLEP LATPETVERD PVKLLQEFCA RRSYSSSYTK AHKDGVSSVV AEVQVEGTTY TATETGPDKI VAKKLAAKSL LNNLKAIVP
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.