Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0068g01520.t01 | |
| VIT_18s0001g07670.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | VIT_18s0001g07670.t01 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | VIT_14s0068g01520.t01 | AT5G41070.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11802 | Soybean | cytosol | 13.76 | 67.37 |
| PGSC0003DMT400042918 | Potato | nucleus | 47.17 | 59.6 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 57.49 | 59.32 |
| Solyc06g048960.2.1 | Tomato | vacuole | 59.35 | 59.19 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 59.57 | 58.77 |
| KRH36816 | Soybean | cytosol | 59.71 | 58.62 |
| Solyc11g008520.1.1 | Tomato | nucleus | 59.43 | 58.05 |
| AT3G03300.1 | Thale cress | nucleus | 56.06 | 56.34 |
| Bra031999.1-P | Field mustard | nucleus | 51.54 | 56.3 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 53.05 | 56.19 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 55.7 | 55.98 |
| CDY50692 | Canola | nucleus | 55.2 | 55.44 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 26.88 | 47.59 |
| Os03t0583900-01 | Rice | nucleus | 47.46 | 46.95 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 46.24 | 46.1 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 46.24 | 46.04 |
| OQU91441 | Sorghum | nucleus | 45.66 | 45.96 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 44.44 | 45.89 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 46.31 | 44.1 |
| HORVU5Hr1G019300.8 | Barley | plastid | 46.38 | 43.86 |
| VIT_11s0149g00100.t01 | Wine grape | cytosol | 5.81 | 40.3 |
| Zm00001d013797_P006 | Maize | nucleus | 20.86 | 39.59 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 3.94 | 38.46 |
| KXG38096 | Sorghum | plastid | 20.93 | 37.53 |
| VIT_04s0008g02150.t01 | Wine grape | cytosol | 8.32 | 33.53 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 6.31 | 30.66 |
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 23.73 | 26.72 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 31.25 | 22.38 |
| VIT_19s0090g00940.t01 | Wine grape | cytosol | 5.38 | 22.26 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 26.95 | 19.35 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100258190 | wikigene:100258190 | Gene3D:2.170.260.10 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| MapMan:35.1 | ProteinID:CCB44498 | ProteinID:CCB44498.1 | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | UniProt:F6GX12 |
| EMBL:FN594959 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 |
| GO:GO:0016891 | GO:GO:0030422 | GO:GO:0031047 | GO:GO:0040029 | GO:GO:0090501 | GO:GO:0090502 |
| InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 |
| InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | EntrezGene:LOC100258190 |
| wikigene:LOC100258190 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 |
| PFAM:PF02170 | PFAM:PF03368 | PFAM:PF04851 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 |
| InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 |
| SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF69065 | UniParc:UPI000210A311 | ArrayExpress:VIT_04s0023g00920 | EnsemblPlantsGene:VIT_04s0023g00920 |
| EnsemblPlants:VIT_04s0023g00920.t01 | RefSeq:XP_002269915 | RefSeq:XP_002269915.2 | InterPro:dsRBD_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr4:-:17331878..17344302
Molecular Weight (calculated)
157807.0 Da
IEP (calculated)
7.389
GRAVY (calculated)
-0.143
Length
1395 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEPVKMIGAD GNNVGQTVDP LPFARSYQIE ALEKAIKQNT IVFLETGSGK TLIAIMLLRY YAHLLRKPSP FIAVFLVPKV VLVPQQAEAV KMHTDLKVGT
0101: YWGDMGVDFW DAATWRKEQD KHEVLVMTPA ILLNGLRHSF FKLDMIKVLI FDECHHARGK DPYACIMKEF YHEQVRSNNS NLPRIFGMTA SPIKTKGTTS
0201: TWSCGKNMIE LENLMNSKIY TSVSEAVLAE FVPFSTPKLT HYKDKDIPSA LFENVAHQLE ILKNKYEHSL ESLNLMESTK ESARKKISKL FSAFLFCLND
0301: LGLWLALKAA EFSFCDDMDI CCWGQLDLSG EEIIKNFNKD AYKVISTYLP SDRELSVGDD LEADAESGFL TTKVICLVGS LLQYRHLKNL RCIVFVERVI
0401: TAIVLQKLLS KLLPKLSGWE AGYIAGNASQ LQSQSRRVQN ALVEEFRKGM VNVIVSTSIL EEGLDVQSCN LVIRFDPSAT VCSFIQSRGR ARMQNSDYLL
0501: MVKSGDDKTL SRLRTYLDSG KVMREESLRN ASLPCAPLKS SLDDEEFYWV ESTRAIVTLS SSIGLLYFYC SRLPSDGYFK PTPRCSINQD MGTCTIYHPK
0601: SCPIQTVSVR GNIKTLKQIA CLEACKELHK AGALTDNLVP QIVEEEAIVA QDENMPYDDE QATYYPPELI NPSLKDPVTP YHCYLIELDQ KYEYEVSPQG
0701: IVLAVRSELE YDVGNVNFDL QVDRGTMTVS MNYVGVIHLT AEQVLMCRKF QITLLRVLID RAIDKGVFDR YDLGNDQMVD YLMLPSTNSR EIPSIVDWKC
0801: LGSVFFSHEN ASNHMGCFFP RMHTKSGFVC SCTLKNSIVY TPHTSQFYCI TGILGELNGN SFLSLKNGGL LTYKEYYRLR HGIELQFDGE KLLKGRRMFV
0901: VQNYLQRCRQ QKEKELSNTT VELPPELCVI FMSPISISII YSFSLIPSIM HRIESLLLAV NLKNIHLNYC KQNDIPTFKV LEAITTKHCQ EGFHLESLET
1001: LGDSFLKYAA SQQLFKTFQN HHEGLLSVKK ERIISNASLC KLGCDRKLPG FIRNESFDPK KWIIAGDQSR SHVFGEELLS STRKIYVSER RKLKSKRIAD
1101: VVEALIGAFL STGGETAALI FMRWLGINVD FVKVPYKRDF PVILKRHVNV SYLESILNYS FRDPSLLVEA LTHGSYMLPE IPRCYQRLEF LGDAVLDYLM
1201: TMHLYHKYPG MSPGLLTDLR SASVNNDCYA QSAVKAKLHQ HILHSSQELH RHIVVTVGNF DKLPVESTFG WESESSFPKV LGDVIESLAG AILVDSDYNK
1301: EVVFQSIRPL LEPLITPETV KLHPARELGE LCQKEHYDIK RVVVSQNGKA SVTIEVEANG AKHKHTSTSD KRTATKLASK EVLKSLKESI AQTGN
0101: YWGDMGVDFW DAATWRKEQD KHEVLVMTPA ILLNGLRHSF FKLDMIKVLI FDECHHARGK DPYACIMKEF YHEQVRSNNS NLPRIFGMTA SPIKTKGTTS
0201: TWSCGKNMIE LENLMNSKIY TSVSEAVLAE FVPFSTPKLT HYKDKDIPSA LFENVAHQLE ILKNKYEHSL ESLNLMESTK ESARKKISKL FSAFLFCLND
0301: LGLWLALKAA EFSFCDDMDI CCWGQLDLSG EEIIKNFNKD AYKVISTYLP SDRELSVGDD LEADAESGFL TTKVICLVGS LLQYRHLKNL RCIVFVERVI
0401: TAIVLQKLLS KLLPKLSGWE AGYIAGNASQ LQSQSRRVQN ALVEEFRKGM VNVIVSTSIL EEGLDVQSCN LVIRFDPSAT VCSFIQSRGR ARMQNSDYLL
0501: MVKSGDDKTL SRLRTYLDSG KVMREESLRN ASLPCAPLKS SLDDEEFYWV ESTRAIVTLS SSIGLLYFYC SRLPSDGYFK PTPRCSINQD MGTCTIYHPK
0601: SCPIQTVSVR GNIKTLKQIA CLEACKELHK AGALTDNLVP QIVEEEAIVA QDENMPYDDE QATYYPPELI NPSLKDPVTP YHCYLIELDQ KYEYEVSPQG
0701: IVLAVRSELE YDVGNVNFDL QVDRGTMTVS MNYVGVIHLT AEQVLMCRKF QITLLRVLID RAIDKGVFDR YDLGNDQMVD YLMLPSTNSR EIPSIVDWKC
0801: LGSVFFSHEN ASNHMGCFFP RMHTKSGFVC SCTLKNSIVY TPHTSQFYCI TGILGELNGN SFLSLKNGGL LTYKEYYRLR HGIELQFDGE KLLKGRRMFV
0901: VQNYLQRCRQ QKEKELSNTT VELPPELCVI FMSPISISII YSFSLIPSIM HRIESLLLAV NLKNIHLNYC KQNDIPTFKV LEAITTKHCQ EGFHLESLET
1001: LGDSFLKYAA SQQLFKTFQN HHEGLLSVKK ERIISNASLC KLGCDRKLPG FIRNESFDPK KWIIAGDQSR SHVFGEELLS STRKIYVSER RKLKSKRIAD
1101: VVEALIGAFL STGGETAALI FMRWLGINVD FVKVPYKRDF PVILKRHVNV SYLESILNYS FRDPSLLVEA LTHGSYMLPE IPRCYQRLEF LGDAVLDYLM
1201: TMHLYHKYPG MSPGLLTDLR SASVNNDCYA QSAVKAKLHQ HILHSSQELH RHIVVTVGNF DKLPVESTFG WESESSFPKV LGDVIESLAG AILVDSDYNK
1301: EVVFQSIRPL LEPLITPETV KLHPARELGE LCQKEHYDIK RVVVSQNGKA SVTIEVEANG AKHKHTSTSD KRTATKLASK EVLKSLKESI AQTGN
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.