Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0056g01550.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20320.1 | VIT_08s0056g01550.t01 | AT3G62800.1 | 24352449 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g005030.2.1 | Tomato | cytosol | 60.86 | 49.09 |
| KRH03544 | Soybean | nucleus | 64.81 | 49.08 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 54.0 | 49.08 |
| KRH20103 | Soybean | nucleus | 64.81 | 49.05 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 57.55 | 43.45 |
| CDY35811 | Canola | nucleus | 57.47 | 43.39 |
| CDX92469 | Canola | nucleus, plastid | 57.47 | 43.36 |
| AT5G20320.1 | Thale cress | cytosol | 56.26 | 40.95 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 50.12 | 38.6 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 49.8 | 37.97 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 49.64 | 37.89 |
| OQU81938 | Sorghum | mitochondrion | 50.69 | 37.72 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 49.15 | 37.25 |
| Os04t0509300-02 | Rice | cytosol | 49.56 | 37.05 |
| TraesCS2B01G383300.2 | Wheat | plastid | 49.64 | 35.78 |
| VIT_19s0090g00940.t01 | Wine grape | cytosol | 7.43 | 27.3 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 5.65 | 24.39 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 26.72 | 23.73 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 30.67 | 19.56 |
| VIT_15s0048g02380.t01 | Wine grape | cytosol, nucleus, plastid | 27.36 | 17.4 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 4.44 | 13.61 |
| VIT_11s0149g00100.t01 | Wine grape | cytosol | 0.81 | 4.98 |
| VIT_04s0008g02150.t01 | Wine grape | cytosol | 0.81 | 2.89 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100243116 | wikigene:100243116 | MapMan:16.10.1.3 | MapMan:16.10.1.4.2 | Gene3D:2.170.260.10 |
| Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | ProteinID:CCB49948 | ProteinID:CCB49948.1 | InterPro:Dicer_dimer_sf |
| InterPro:Dicer_dimerisation_dom | UniProt:F6HCK3 | EMBL:FN595516 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006353 | GO:GO:0006396 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009616 | GO:GO:0009791 |
| GO:GO:0009944 | GO:GO:0009987 | GO:GO:0010050 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0010492 |
| GO:GO:0010599 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0030422 | GO:GO:0040029 |
| GO:GO:0048608 | GO:GO:0051214 | GO:GO:0051607 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase_C |
| InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014720 | InterPro:IPR036389 |
| InterPro:IPR038248 | EntrezGene:LOC100243116 | wikigene:LOC100243116 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | PFAM:PF00035 |
| PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | PFAM:PF14709 | ScanProsite:PS00517 |
| PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 |
| PANTHER:PTHR14950:SF15 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | TIGR:TC55141 | UniParc:UPI000210906F |
| ArrayExpress:VIT_11s0149g00120 | EnsemblPlantsGene:VIT_11s0149g00120 | EnsemblPlants:VIT_11s0149g00120.t01 | unigene:Vvi.16946 | RefSeq:XP_002264486 | RefSeq:XP_002264486.2 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:6977744..7007215
Molecular Weight (calculated)
140381.0 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.250
Length
1239 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGKHKCGRDT VQKTTIDKSR RQPNMKCIIF VNRIVTARSL AYILQNLKFL SYWKCDFLVG VHSGLKSMSR KTMNIILDKF RSNELNLLVA TKVGEEGLDI
0101: QTCCLVIRFD LPETVASFIQ SRGRARMPQS EYAFLVDSGK QKEIDLIEHF KKDEDRMNME ISVRTSSEAF TDLEERIYKV DSSGASISSV YSISLLHQYC
0201: SKLLHDEYFN PKPEFYYFDD SGGTVCQINL PSSAPIHQIV STPQSSMEAA KKDACLKAIQ DLHVLGALND YLLPDQGNAH EELMLVSSDS DSCEADEDSR
0301: EELHEMLVPA ALKDSWSNLE HICLNSYYIK FTPIPEDRIY RKFGLFVKAP LPAEAERMVL DLHLSHGRSV MTELVPSGVT EFDENEILQA HNFQEMYLQV
0401: ILNRSIFETE IVHLGKSDFC KSSSSTFYLL LPVILNECEN MITVDWQIIR RCLSSPIFRN PADRVDKLPP LNDHLRLADG VYRESDVINS LVYAPYKKAF
0501: FFVSRISAGR NGYSPYKDSS HLEYTWKTFG IHLEFPKQPL LSAKRLFSLR NLLHNRKHGS SESHELEEHF MDIPPELCHL KIIGFSKDIG SSVSLLPSIM
0601: HRLENLLVAI ELKNMLSASF PEGAEITAHR VLEALTTEKC LERFSLERLE VLGDAFLKFA VGRRLFLLYD ALDEGELTRR RSNVVNNSNL FKLAVRRNLQ
0701: VYIRDQSFDP GQFFALGHRC PRICEKETEM AIHSRCGKTP TTEVRCSKCH HWLHKKTIAD VVEALVGAFI VDSGFKAATV FLKWIGIQVD FEAFQVINAC
0801: ISSTSYMQLA SSTDVPALEK LLGHEFLHKG LLLQAIVHPS YNKHGGGCYQ RLEFLGDAVL DYLITSYLYS VYPKLKPGQM TDLRSLSVNN KSFANVAVSR
0901: SLHEFLICDA SSLSEAIKKY VDFIRTPTLD KDLHEGPKCP KALGDLVESC MGAILLDKGF DLNHAWNIML SILDRIMSFS DLQLNPIREL QELCQHHNWD
1001: LQFPTSKQGG TFLVEAKVSG DDICTTASAT NANRKDARRI ASNQLFKKLK DQGYMLHSES LEEVLKSSSK MEAKLIGYDE KPIDVAFDSF EFEKLKMQEH
1101: SNSDCNRKIQ PMKMKPKNVC SPCIKPVSDL PQFQIKASEQ QPHEIVQGGV QKVSTKARMY EICAANYWKP PSFECCKEEG PSHLKLFTVK LTMKIEDGSG
1201: LLLECYGYPK STKKAAADSA AEGAIAYLKQ EGYFLPNSE
0101: QTCCLVIRFD LPETVASFIQ SRGRARMPQS EYAFLVDSGK QKEIDLIEHF KKDEDRMNME ISVRTSSEAF TDLEERIYKV DSSGASISSV YSISLLHQYC
0201: SKLLHDEYFN PKPEFYYFDD SGGTVCQINL PSSAPIHQIV STPQSSMEAA KKDACLKAIQ DLHVLGALND YLLPDQGNAH EELMLVSSDS DSCEADEDSR
0301: EELHEMLVPA ALKDSWSNLE HICLNSYYIK FTPIPEDRIY RKFGLFVKAP LPAEAERMVL DLHLSHGRSV MTELVPSGVT EFDENEILQA HNFQEMYLQV
0401: ILNRSIFETE IVHLGKSDFC KSSSSTFYLL LPVILNECEN MITVDWQIIR RCLSSPIFRN PADRVDKLPP LNDHLRLADG VYRESDVINS LVYAPYKKAF
0501: FFVSRISAGR NGYSPYKDSS HLEYTWKTFG IHLEFPKQPL LSAKRLFSLR NLLHNRKHGS SESHELEEHF MDIPPELCHL KIIGFSKDIG SSVSLLPSIM
0601: HRLENLLVAI ELKNMLSASF PEGAEITAHR VLEALTTEKC LERFSLERLE VLGDAFLKFA VGRRLFLLYD ALDEGELTRR RSNVVNNSNL FKLAVRRNLQ
0701: VYIRDQSFDP GQFFALGHRC PRICEKETEM AIHSRCGKTP TTEVRCSKCH HWLHKKTIAD VVEALVGAFI VDSGFKAATV FLKWIGIQVD FEAFQVINAC
0801: ISSTSYMQLA SSTDVPALEK LLGHEFLHKG LLLQAIVHPS YNKHGGGCYQ RLEFLGDAVL DYLITSYLYS VYPKLKPGQM TDLRSLSVNN KSFANVAVSR
0901: SLHEFLICDA SSLSEAIKKY VDFIRTPTLD KDLHEGPKCP KALGDLVESC MGAILLDKGF DLNHAWNIML SILDRIMSFS DLQLNPIREL QELCQHHNWD
1001: LQFPTSKQGG TFLVEAKVSG DDICTTASAT NANRKDARRI ASNQLFKKLK DQGYMLHSES LEEVLKSSSK MEAKLIGYDE KPIDVAFDSF EFEKLKMQEH
1101: SNSDCNRKIQ PMKMKPKNVC SPCIKPVSDL PQFQIKASEQ QPHEIVQGGV QKVSTKARMY EICAANYWKP PSFECCKEEG PSHLKLFTVK LTMKIEDGSG
1201: LLLECYGYPK STKKAAADSA AEGAIAYLKQ EGYFLPNSE
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEHCFIKMEC ISLLIFDECH HAQQQSNHPY AEIMKVFYKS ESLQRPRIFG MTASPVVGKG SFQSENLSKS INSLENLLNA
0301: KVYSVESNVQ LDGFVSSPLV KVYYYRSALS DASQSTIRYE NMLEDIKQRC LASLKLLIDT HQTQTLLSMK RLLKRSHDNL IYTLLNLGLW GAIQAAKIQL
0401: NSDHNVQDEP VGKNPKSKIC DTYLSMAAEA LSSGVAKDEN ASDLLSLAAL KEPLFSRKLV QLIKILSVFR LEPHMKCIIF VNRIVTARTL SCILNNLELL
0501: RSWKSDFLVG LSSGLKSMSR RSMETILKRF QSKELNLLVA TKVGEEGLDI QTCCLVIRYD LPETVTSFIQ SRGRARMPQS EYAFLVDSGN EKEMDLIENF
0601: KVNEDRMNLE ITYRSSEETC PRLDEELYKV HETGACISGG SSISLLYKYC SRLPHDEFFQ PKPEFQFKPV DEFGGTICRI TLPANAPISE IESSLLPSTE
0701: AAKKDACLKA VHELHNLGVL NDFLLPDSKD EIEDELSDDE FDFDNIKGEG CSRGDLYEMR VPVLFKQKWD PSTSCVNLHS YYIMFVPHPA DRIYKKFGFF
0801: MKSPLPVEAE TMDIDLHLAH QRSVSVKIFP SGVTEFDNDE IRLAELFQEI ALKVLFERGE LIPDFVPLEL QDSSRTSKST FYLLLPLCLH DGESVISVDW
0901: VTIRNCLSSP IFKTPSVLVE DIFPPSGSHL KLANGCWNID DVKNSLVFTT YSKQFYFVAD ICHGRNGFSP VKESSTKSHV ESIYKLYGVE LKHPAQPLLR
1001: VKPLCHVRNL LHNRMQTNLE PQELDEYFIE IPPELSHLKI KGLSKDIGSS LSLLPSIMHR MENLLVAIEL KHVLSASIPE IAEVSGHRVL EALTTEKCHE
1101: RLSLERLEVL GDAFLKFAVS RHLFLHHDSL DEGELTRRRS NVVNNSNLCR LAIKKNLQVY IRDQALDPTQ FFAFGHPCRV TCDEVASKEV HSLNRDLGIL
1201: ESNTGEIRCS KGHHWLYKKT IADVVEALVG AFLVDSGFKG AVKFLKWIGV NVDFESLQVQ DACIASRRYL PLTTRNNLET LENQLDYKFL HKGLLVQAFI
1301: HPSYNRHGGG CYQRLEFLGD AVLDYLMTSY FFTVFPKLKP GQLTDLRSLS VNNEALANVA VSFSLKRFLF CESIYLHEVI EDYTNFLASS PLASGQSEGP
1401: RCPKVLGDLV ESCLGALFLD CGFNLNHVWT MMLSFLDPVK NLSNLQISPI KELIELCQSY KWDREISATK KDGAFTVELK VTKNGCCLTV SATGRNKREG
1501: TKKAAQLMIT NLKAHENITT SHPLEDVLKN GIRNEAKLIG YNEDPIDVVD LVGLDVENLN ILETFGGNSE RSSSYVIRRG LPQAPSKTED RLPQKAIIKA
1601: GGPSSKTAKS LLHETCVANC WKPPHFECCE EEGPGHLKSF VYKVILEVED APNMTLECYG EARATKKGAA EHAAQAAIWC LKHSGFLC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEHCFIKMEC ISLLIFDECH HAQQQSNHPY AEIMKVFYKS ESLQRPRIFG MTASPVVGKG SFQSENLSKS INSLENLLNA
0301: KVYSVESNVQ LDGFVSSPLV KVYYYRSALS DASQSTIRYE NMLEDIKQRC LASLKLLIDT HQTQTLLSMK RLLKRSHDNL IYTLLNLGLW GAIQAAKIQL
0401: NSDHNVQDEP VGKNPKSKIC DTYLSMAAEA LSSGVAKDEN ASDLLSLAAL KEPLFSRKLV QLIKILSVFR LEPHMKCIIF VNRIVTARTL SCILNNLELL
0501: RSWKSDFLVG LSSGLKSMSR RSMETILKRF QSKELNLLVA TKVGEEGLDI QTCCLVIRYD LPETVTSFIQ SRGRARMPQS EYAFLVDSGN EKEMDLIENF
0601: KVNEDRMNLE ITYRSSEETC PRLDEELYKV HETGACISGG SSISLLYKYC SRLPHDEFFQ PKPEFQFKPV DEFGGTICRI TLPANAPISE IESSLLPSTE
0701: AAKKDACLKA VHELHNLGVL NDFLLPDSKD EIEDELSDDE FDFDNIKGEG CSRGDLYEMR VPVLFKQKWD PSTSCVNLHS YYIMFVPHPA DRIYKKFGFF
0801: MKSPLPVEAE TMDIDLHLAH QRSVSVKIFP SGVTEFDNDE IRLAELFQEI ALKVLFERGE LIPDFVPLEL QDSSRTSKST FYLLLPLCLH DGESVISVDW
0901: VTIRNCLSSP IFKTPSVLVE DIFPPSGSHL KLANGCWNID DVKNSLVFTT YSKQFYFVAD ICHGRNGFSP VKESSTKSHV ESIYKLYGVE LKHPAQPLLR
1001: VKPLCHVRNL LHNRMQTNLE PQELDEYFIE IPPELSHLKI KGLSKDIGSS LSLLPSIMHR MENLLVAIEL KHVLSASIPE IAEVSGHRVL EALTTEKCHE
1101: RLSLERLEVL GDAFLKFAVS RHLFLHHDSL DEGELTRRRS NVVNNSNLCR LAIKKNLQVY IRDQALDPTQ FFAFGHPCRV TCDEVASKEV HSLNRDLGIL
1201: ESNTGEIRCS KGHHWLYKKT IADVVEALVG AFLVDSGFKG AVKFLKWIGV NVDFESLQVQ DACIASRRYL PLTTRNNLET LENQLDYKFL HKGLLVQAFI
1301: HPSYNRHGGG CYQRLEFLGD AVLDYLMTSY FFTVFPKLKP GQLTDLRSLS VNNEALANVA VSFSLKRFLF CESIYLHEVI EDYTNFLASS PLASGQSEGP
1401: RCPKVLGDLV ESCLGALFLD CGFNLNHVWT MMLSFLDPVK NLSNLQISPI KELIELCQSY KWDREISATK KDGAFTVELK VTKNGCCLTV SATGRNKREG
1501: TKKAAQLMIT NLKAHENITT SHPLEDVLKN GIRNEAKLIG YNEDPIDVVD LVGLDVENLN ILETFGGNSE RSSSYVIRRG LPQAPSKTED RLPQKAIIKA
1601: GGPSSKTAKS LLHETCVANC WKPPHFECCE EEGPGHLKSF VYKVILEVED APNMTLECYG EARATKKGAA EHAAQAAIWC LKHSGFLC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.