Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH57881 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G20320.1 | KRH57881 | AT3G62800.1 | 24352449 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03544 | Soybean | nucleus | 95.36 | 95.42 |
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 49.05 | 64.81 |
| Solyc07g005030.2.1 | Tomato | cytosol | 55.16 | 58.79 |
| CDY35811 | Canola | nucleus | 55.59 | 55.45 |
| CDX92469 | Canola | nucleus, plastid | 55.22 | 55.05 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 55.1 | 54.97 |
| AT5G20320.1 | Thale cress | cytosol | 54.86 | 52.76 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 49.11 | 49.97 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 48.69 | 49.11 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 48.69 | 49.05 |
| OQU81938 | Sorghum | mitochondrion | 49.42 | 48.59 |
| Os04t0509300-02 | Rice | cytosol | 48.75 | 48.16 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 40.07 | 48.13 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 47.95 | 48.01 |
| TraesCS2B01G383300.2 | Wheat | plastid | 48.69 | 46.36 |
| KRH11802 | Soybean | cytosol | 6.41 | 36.84 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 27.79 | 32.18 |
| KRH36816 | Soybean | cytosol | 27.73 | 31.95 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 7.7 | 31.19 |
| KRH14361 | Soybean | cytosol | 6.41 | 30.43 |
| KRH52276 | Soybean | cytosol | 9.1 | 29.62 |
| KRH61605 | Soybean | nucleus | 29.87 | 29.21 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 12.46 | 25.89 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 28.41 | 23.88 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 28.28 | 23.8 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100797277 | MapMan:16.10.1.3 | MapMan:16.10.1.4.2 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 |
| Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | EMBL:ACUP02008239 | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | EnsemblPlantsGene:GLYMA_13G156500 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 |
| GO:GO:0030422 | GO:GO:0031047 | GO:GO:0040029 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase/UvrB_N |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 |
| InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | UniProt:K7M014 | EnsemblPlants:KRH20103 |
| ProteinID:KRH20103 | ProteinID:KRH20103.1 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | PFAM:PF04851 | PFAM:PF14709 | ScanProsite:PS00517 |
| PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF15 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | UniParc:UPI000296377A | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr13:-:27136354..27170500
Molecular Weight (calculated)
183927.0 Da
IEP (calculated)
6.595
GRAVY (calculated)
-0.189
Length
1637 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPDGESSAVA GGQVSMEPSL SLSDQLQSLS LSQVKNHDDS VKKDPRKIAR RYQLELCKKA MEENIIVYLG TGCGKTHIAV LLMHEMGDLI RKPQKNICVF
0101: LAPTVALVHQ QAKVIADSTD FKVGTYCGSS KRLKHHQDWE QEMGQYEVLV MTPQILHHNL SHCFITMEMI ALLIFDECHH AQVKSNHAYA VIMKVFYKSN
0201: STKVPRIFGM TASPVVGKGA SSEANLAKSI NSLEHILDAK VYSVEDKELQ SFVTTPVINI YHYVSTASGE TSLHLKIEEI KRQCIATLGR SIEDHQKRMN
0301: TKKLLNRMHD NVIFGLQNLG IWGALQASHI LLSGDHSERH ELVEADGNSS DDSLCDKYLA QAAELFTSQC MIGDRVTDLS SVEILKEPFF SAKLLRLIGI
0401: LSNFRLQKNM KCIIFVNRIV TARSLSYILQ KLKLLRQWRS DFLVGVHAGL KSMSRKTMNI IVDKFRSGEL NLLVATKVGE EGLDIQTCCL VIRFDLPETV
0501: ASFIQSRGRA RMPQSEYAFL VDSGNKKEID VIDGFKEDEY RMNMEVTFRT SKETYIIPEE RIFRIDSSGA SVSSGYSISL LHQYCSKLPH DEYFDPKPSF
0601: HYLDDSGGIS CHITLPSNAP INQILGTPQL SMEASKREAC LKAIEELYNL GALSDCLLPK QDDAEPEVQV SGSSDEDECE DAISRGKLHE MLVPSAFGQS
0701: WINEDNIVRL NSYYIKFCPY PEDRVYKEFG LFMMTCLPME AEKLELDLHL AHGRSVMTMF VPFGVVEFNK DEIKMAENFQ EMFLKIILDR LEFISEFVDL
0801: GMSAESHSGT STFYLLLPVV LQEYGNAMEV DWKIVKRCLC SPIFRHPADT MDKKVFPLDI HLQLANGYRS VRNVENSLVY APHKKNFYFV TNVNYEKNGY
0901: SPHNDSGTSS YVDYFIEKFS IHLKCPKQPL LHVKPVSNLH NLLHNRKRED AEPQELDEYL IYLPPELCEL KVIGFSKDIG SSISLLPSIM HRLGNLLVAI
1001: ELKHMLSSSF PEAAEISAIR VLEALTTEKC QERFSLERLE VLGDAFLKFA VARHFFLMHD SLHEGDLTKR RSNAVNNSNL FKLAIKRNLQ VYICDQTFDP
1101: TQFYALGRPC PRVCSNETEE SIHFCLNSVM QQGKATETRC SKNHHWLHRK TIADVVEALV GAFLVDSGFK AAIAFLSWIG IQVDFEASQV VDICIASASY
1201: SPLSSEVDIP SLEGKLGHHF FHKGLLLQAF VHPSYNKLGG GCYQRLEFLG DAVLDYLITS YLFSAYPKLK PGQLTDLRSL SVNNKAFACL AVDRSFDNFL
1301: LCDSSGLSEA IKKYVDYVRR PVSDNGIKEG PKCPKALGDL VESCVGAILL DSGFNLNKVW KIMTSFLDPI MKFSSSLQLS PVRDLRELCQ SHNLELEFLP
1401: VPSKLTKRFS VEAKVSGNGV CETASATGQN KKEACRIASQ LLFLKFKAQG WKAKSKTLEE VLESTSKMEP KLIGYDETPI DVTDTNTAKH IVVNADPYNN
1501: SNPEICPMQL TDEICSPCVK PFGQRLQSSA KGKLSQIFEN RDCGSDSSGT GTARSRLYEL CAAYCWKPPS FECCKKEGPD HLKQFTCKVT LEIEEAQNLI
1601: LEFVGEPLSK KKDAAESAAE GALWYLQHEG FLPSIGN
0101: LAPTVALVHQ QAKVIADSTD FKVGTYCGSS KRLKHHQDWE QEMGQYEVLV MTPQILHHNL SHCFITMEMI ALLIFDECHH AQVKSNHAYA VIMKVFYKSN
0201: STKVPRIFGM TASPVVGKGA SSEANLAKSI NSLEHILDAK VYSVEDKELQ SFVTTPVINI YHYVSTASGE TSLHLKIEEI KRQCIATLGR SIEDHQKRMN
0301: TKKLLNRMHD NVIFGLQNLG IWGALQASHI LLSGDHSERH ELVEADGNSS DDSLCDKYLA QAAELFTSQC MIGDRVTDLS SVEILKEPFF SAKLLRLIGI
0401: LSNFRLQKNM KCIIFVNRIV TARSLSYILQ KLKLLRQWRS DFLVGVHAGL KSMSRKTMNI IVDKFRSGEL NLLVATKVGE EGLDIQTCCL VIRFDLPETV
0501: ASFIQSRGRA RMPQSEYAFL VDSGNKKEID VIDGFKEDEY RMNMEVTFRT SKETYIIPEE RIFRIDSSGA SVSSGYSISL LHQYCSKLPH DEYFDPKPSF
0601: HYLDDSGGIS CHITLPSNAP INQILGTPQL SMEASKREAC LKAIEELYNL GALSDCLLPK QDDAEPEVQV SGSSDEDECE DAISRGKLHE MLVPSAFGQS
0701: WINEDNIVRL NSYYIKFCPY PEDRVYKEFG LFMMTCLPME AEKLELDLHL AHGRSVMTMF VPFGVVEFNK DEIKMAENFQ EMFLKIILDR LEFISEFVDL
0801: GMSAESHSGT STFYLLLPVV LQEYGNAMEV DWKIVKRCLC SPIFRHPADT MDKKVFPLDI HLQLANGYRS VRNVENSLVY APHKKNFYFV TNVNYEKNGY
0901: SPHNDSGTSS YVDYFIEKFS IHLKCPKQPL LHVKPVSNLH NLLHNRKRED AEPQELDEYL IYLPPELCEL KVIGFSKDIG SSISLLPSIM HRLGNLLVAI
1001: ELKHMLSSSF PEAAEISAIR VLEALTTEKC QERFSLERLE VLGDAFLKFA VARHFFLMHD SLHEGDLTKR RSNAVNNSNL FKLAIKRNLQ VYICDQTFDP
1101: TQFYALGRPC PRVCSNETEE SIHFCLNSVM QQGKATETRC SKNHHWLHRK TIADVVEALV GAFLVDSGFK AAIAFLSWIG IQVDFEASQV VDICIASASY
1201: SPLSSEVDIP SLEGKLGHHF FHKGLLLQAF VHPSYNKLGG GCYQRLEFLG DAVLDYLITS YLFSAYPKLK PGQLTDLRSL SVNNKAFACL AVDRSFDNFL
1301: LCDSSGLSEA IKKYVDYVRR PVSDNGIKEG PKCPKALGDL VESCVGAILL DSGFNLNKVW KIMTSFLDPI MKFSSSLQLS PVRDLRELCQ SHNLELEFLP
1401: VPSKLTKRFS VEAKVSGNGV CETASATGQN KKEACRIASQ LLFLKFKAQG WKAKSKTLEE VLESTSKMEP KLIGYDETPI DVTDTNTAKH IVVNADPYNN
1501: SNPEICPMQL TDEICSPCVK PFGQRLQSSA KGKLSQIFEN RDCGSDSSGT GTARSRLYEL CAAYCWKPPS FECCKKEGPD HLKQFTCKVT LEIEEAQNLI
1601: LEFVGEPLSK KKDAAESAAE GALWYLQHEG FLPSIGN
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.