Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G364700.2 | Wheat | cytosol | 93.14 | 98.64 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 92.38 | 97.72 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 91.16 | 95.84 |
| Os04t0509300-02 | Rice | cytosol | 71.9 | 74.59 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 68.7 | 73.4 |
| OQU81938 | Sorghum | mitochondrion | 69.98 | 72.25 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 43.8 | 55.25 |
| VIT_11s0149g00120.t01 | Wine grape | cytosol | 35.78 | 49.64 |
| KRH03544 | Soybean | nucleus | 46.66 | 49.02 |
| KRH20103 | Soybean | nucleus | 46.36 | 48.69 |
| Solyc07g005030.2.1 | Tomato | cytosol | 43.34 | 48.5 |
| Bra002293.1-P | Field mustard | nucleus, plastid | 43.51 | 45.58 |
| CDY35811 | Canola | nucleus | 43.46 | 45.52 |
| CDX92469 | Canola | nucleus, plastid | 43.34 | 45.37 |
| AT5G20320.1 | Thale cress | cytosol | 43.28 | 43.71 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 24.26 | 30.87 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 6.46 | 29.68 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 5.29 | 29.45 |
| PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 6.69 | 28.47 |
| TraesCS7B01G428200.1 | Wheat | mitochondrion | 5.93 | 27.95 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 16.0 | 26.54 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 25.83 | 26.48 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 27.11 | 23.52 |
Protein Annotations
Description
No Description!
Coordinates
chr2B:-:546974237..547006207
Molecular Weight (calculated)
194151.0 Da
IEP (calculated)
6.620
GRAVY (calculated)
-0.267
Length
1719 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTVPSPAASS RAPRAPFPLS TRHDPLGPHF PSLPFITMCA FRISVSPTDS SSSPSSPPLT LQPPPRRPAV APRGTQERER GEGEGAPLPR EASAMGDIST
0101: AAASAEEREP QPKDPRTIAR KYQLDLCKRA LEENIIVYLG TGCGKTHIAV LLIYELGHLI RKPRRDVCIF LAPTVPLVLQ QATVIANSTN FRVQSYYGDG
0201: KNPRNHEDWE TEMGESEVLV MTPQILLHSL RHCFIKMDSI ALLIFDECHH AQAHKRHPYA QIMKEFYDND MVKPPRIFGM TASPVIGKGG SNKLNYTKCI
0301: NSLEELLHAK VCSVDNAELE SVLAFPDMEV YTYVPLSHSN LTVTYNKELD CSKLESERIL RESLYDFKDS QKKLKSLGRL HGNLVFCLQE LGSFGALQAA
0401: KAFLSFDGDV LDRKESDMND NSTRFKHHYL NKAISVLNCN ILDGTHDDSF RLEMLEEPFF SNKIVVLIKI LSRYRLEENM KCIVFVKRIT VARAIAHILQ
0501: NLKGLDLWKC EFLVGRHSGP KNMSRQKMDA IVENFSSGEV NLLIATSVGE EGLDIQTCCL VVRFDLPETV ASFIQSRGRA RMTNSKYVVL LERGNHSQEK
0601: LLNDYIDGEG IMNGEIDLRT SNDVFDHLEE KSYRVEKTGA SISTACSVSL LHRYCYNLPK DMFFNPSPAF IYIDDTEGII CRVILPPNAA FRQVDGQPCQ
0701: SNDEAKRDAC LEAYVKLYEL GALTDFLLPG SGSGKNRAST TNGSASNSHD DESLREELHE MLIPTILKPS TCKLDSPLNL HFYYIQFFPI PADRHYRIFG
0801: LFVINPLPME AEKLEVDLHL ARGRIVKAGM KHLGTISFDE EQMMLARNFQ EMFLKVLLDR SEFTVSHVML LSNSETLQFN STFYLLLPIK QELYGDIFMI
0901: DWPTVKRCLS SPVFKDPTGV SAHGSYLPDE SLRLLDNMYS KTDVVGSLIF APHIKTFFVI DVILNELNAR SEYDGATYED HYKERFGIKL SHPEQPLLHA
1001: KQLCNLHNLL HDRLRETTEE GHELMEHFVE LPPELCSLKI IGFSKDMCSS LSLLPSLMCR LENLLVAIEL KDVMLSSFSE ASQISASGIL EALTTERCLE
1101: RISLERFEVL GDAFLKYVVG RHNFLTYEGL DEGQLTSRRS AIVNNSHLYE LSIKRNLQVY IRDQHFEPTQ FIALGRPCKV VCNADTEVNI HTDSRENCNL
1201: RCTKSHHWLH RKTIADAVES LVGAFLVEGG FKAAFAFLRW VGIDVDFKDS SLYRVLDASS INLSLTNHTN VGELEELIGY NFKHKGLILE AFVHPSFNKH
1301: SGGCYQKLEF LGDAVLEYLI TSYLYSAYPD LKPGQITDLK SLAVSNNSLA YVAVQKGIHK YLIKDSNYLS TAVNKFENYI RLPNSEKDLV EEPACPKVLG
1401: DIVESCVAAV LLDSGFNLNY VWTLVLMLLK PVLSFSDMHM NPMREIRELC QCHELELGLP EPMKADGEYH VKVEVNINSQ VISSAAANRN SKVARKFAAQ
1501: ETLSKLKNYG YTHKNKSLEE ILRDARKKEP ELLGYNEEPI KVEADISAEM NNLKIGKERD ANISFQNTEI SIRGTLRTSS QRTAGNTMFS KDDVSIERNN
1601: QLKVAKQNAC LPKGTTQKNI RKEYHGDMVN KTAKSFLFEV CAVSYWKPPE FELCKEEGPS HLRRFTYKVT VQIRGPSETL LECYSDAQLQ KKAAQEHAAQ
1701: GALWYLRQHG YLPKDEVCV
0101: AAASAEEREP QPKDPRTIAR KYQLDLCKRA LEENIIVYLG TGCGKTHIAV LLIYELGHLI RKPRRDVCIF LAPTVPLVLQ QATVIANSTN FRVQSYYGDG
0201: KNPRNHEDWE TEMGESEVLV MTPQILLHSL RHCFIKMDSI ALLIFDECHH AQAHKRHPYA QIMKEFYDND MVKPPRIFGM TASPVIGKGG SNKLNYTKCI
0301: NSLEELLHAK VCSVDNAELE SVLAFPDMEV YTYVPLSHSN LTVTYNKELD CSKLESERIL RESLYDFKDS QKKLKSLGRL HGNLVFCLQE LGSFGALQAA
0401: KAFLSFDGDV LDRKESDMND NSTRFKHHYL NKAISVLNCN ILDGTHDDSF RLEMLEEPFF SNKIVVLIKI LSRYRLEENM KCIVFVKRIT VARAIAHILQ
0501: NLKGLDLWKC EFLVGRHSGP KNMSRQKMDA IVENFSSGEV NLLIATSVGE EGLDIQTCCL VVRFDLPETV ASFIQSRGRA RMTNSKYVVL LERGNHSQEK
0601: LLNDYIDGEG IMNGEIDLRT SNDVFDHLEE KSYRVEKTGA SISTACSVSL LHRYCYNLPK DMFFNPSPAF IYIDDTEGII CRVILPPNAA FRQVDGQPCQ
0701: SNDEAKRDAC LEAYVKLYEL GALTDFLLPG SGSGKNRAST TNGSASNSHD DESLREELHE MLIPTILKPS TCKLDSPLNL HFYYIQFFPI PADRHYRIFG
0801: LFVINPLPME AEKLEVDLHL ARGRIVKAGM KHLGTISFDE EQMMLARNFQ EMFLKVLLDR SEFTVSHVML LSNSETLQFN STFYLLLPIK QELYGDIFMI
0901: DWPTVKRCLS SPVFKDPTGV SAHGSYLPDE SLRLLDNMYS KTDVVGSLIF APHIKTFFVI DVILNELNAR SEYDGATYED HYKERFGIKL SHPEQPLLHA
1001: KQLCNLHNLL HDRLRETTEE GHELMEHFVE LPPELCSLKI IGFSKDMCSS LSLLPSLMCR LENLLVAIEL KDVMLSSFSE ASQISASGIL EALTTERCLE
1101: RISLERFEVL GDAFLKYVVG RHNFLTYEGL DEGQLTSRRS AIVNNSHLYE LSIKRNLQVY IRDQHFEPTQ FIALGRPCKV VCNADTEVNI HTDSRENCNL
1201: RCTKSHHWLH RKTIADAVES LVGAFLVEGG FKAAFAFLRW VGIDVDFKDS SLYRVLDASS INLSLTNHTN VGELEELIGY NFKHKGLILE AFVHPSFNKH
1301: SGGCYQKLEF LGDAVLEYLI TSYLYSAYPD LKPGQITDLK SLAVSNNSLA YVAVQKGIHK YLIKDSNYLS TAVNKFENYI RLPNSEKDLV EEPACPKVLG
1401: DIVESCVAAV LLDSGFNLNY VWTLVLMLLK PVLSFSDMHM NPMREIRELC QCHELELGLP EPMKADGEYH VKVEVNINSQ VISSAAANRN SKVARKFAAQ
1501: ETLSKLKNYG YTHKNKSLEE ILRDARKKEP ELLGYNEEPI KVEADISAEM NNLKIGKERD ANISFQNTEI SIRGTLRTSS QRTAGNTMFS KDDVSIERNN
1601: QLKVAKQNAC LPKGTTQKNI RKEYHGDMVN KTAKSFLFEV CAVSYWKPPE FELCKEEGPS HLRRFTYKVT VQIRGPSETL LECYSDAQLQ KKAAQEHAAQ
1701: GALWYLRQHG YLPKDEVCV
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI
0201: HCGGKRIVKS HSEWEREIAA NEVLVMTPQI LLHNLQHCFI KMECISLLIF DECHHAQQQS NHPYAEIMKV FYKSESLQRP RIFGMTASPV VGKGSFQSEN
0301: LSKSINSLEN LLNAKVYSVE SNVQLDGFVS SPLVKVYYYR SALSDASQST IRYENMLEDI KQRCLASLKL LIDTHQTQTL LSMKRLLKRS HDNLIYTLLN
0401: LGLWGAIQAA KIQLNSDHNV QDEPVGKNPK SKICDTYLSM AAEALSSGVA KDENASDLLS LAALKEPLFS RKLVQLIKIL SVFRLEPHMK CIIFVNRIVT
0501: ARTLSCILNN LELLRSWKSD FLVGLSSGLK SMSRRSMETI LKRFQSKELN LLVATKVGEE GLDIQTCCLV IRYDLPETVT SFIQSRGRAR MPQSEYAFLV
0601: DSGNEKEMDL IENFKVNEDR MNLEITYRSS EETCPRLDEE LYKVHETGAC ISGGSSISLL YKYCSRLPHD EFFQPKPEFQ FKPVDEFGGT ICRITLPANA
0701: PISEIESSLL PSTEAAKKDA CLKAVHELHN LGVLNDFLLP DSKDEIEDEL SDDEFDFDNI KGEGCSRGDL YEMRVPVLFK QKWDPSTSCV NLHSYYIMFV
0801: PHPADRIYKK FGFFMKSPLP VEAETMDIDL HLAHQRSVSV KIFPSGVTEF DNDEIRLAEL FQEIALKVLF ERGELIPDFV PLELQDSSRT SKSTFYLLLP
0901: LCLHDGESVI SVDWVTIRNC LSSPIFKTPS VLVEDIFPPS GSHLKLANGC WNIDDVKNSL VFTTYSKQFY FVADICHGRN GFSPVKESST KSHVESIYKL
1001: YGVELKHPAQ PLLRVKPLCH VRNLLHNRMQ TNLEPQELDE YFIEIPPELS HLKIKGLSKD IGSSLSLLPS IMHRMENLLV AIELKHVLSA SIPEIAEVSG
1101: HRVLEALTTE KCHERLSLER LEVLGDAFLK FAVSRHLFLH HDSLDEGELT RRRSNVVNNS NLCRLAIKKN LQVYIRDQAL DPTQFFAFGH PCRVTCDEVA
1201: SKEVHSLNRD LGILESNTGE IRCSKGHHWL YKKTIADVVE ALVGAFLVDS GFKGAVKFLK WIGVNVDFES LQVQDACIAS RRYLPLTTRN NLETLENQLD
1301: YKFLHKGLLV QAFIHPSYNR HGGGCYQRLE FLGDAVLDYL MTSYFFTVFP KLKPGQLTDL RSLSVNNEAL ANVAVSFSLK RFLFCESIYL HEVIEDYTNF
1401: LASSPLASGQ SEGPRCPKVL GDLVESCLGA LFLDCGFNLN HVWTMMLSFL DPVKNLSNLQ ISPIKELIEL CQSYKWDREI SATKKDGAFT VELKVTKNGC
1501: CLTVSATGRN KREGTKKAAQ LMITNLKAHE NITTSHPLED VLKNGIRNEA KLIGYNEDPI DVVDLVGLDV ENLNILETFG GNSERSSSYV IRRGLPQAPS
1601: KTEDRLPQKA IIKAGGPSSK TAKSLLHETC VANCWKPPHF ECCEEEGPGH LKSFVYKVIL EVEDAPNMTL ECYGEARATK KGAAEHAAQA AIWCLKHSGF
1701: LC
Arabidopsis Description
DCL4Dicer-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P84634]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.