Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G411200.6 | Wheat | nucleus | 94.87 | 97.37 |
| TraesCS3A01G415400.2 | Wheat | nucleus | 97.2 | 97.14 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 90.82 | 90.39 |
| Os01t0909200-01 | Rice | cytosol | 69.41 | 70.5 |
| KXG33962 | Sorghum | nucleus | 67.92 | 68.74 |
| Zm00001d042432_P007 | Maize | cytosol | 66.91 | 67.27 |
| GSMUA_Achr10P... | Banana | nucleus | 21.17 | 53.54 |
| Solyc08g067210.2.1 | Tomato | nucleus | 39.71 | 46.57 |
| KRH61605 | Soybean | nucleus | 46.09 | 46.18 |
| GSMUA_Achr10P... | Banana | cytosol | 11.63 | 46.1 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 27.61 | 44.69 |
| KRH52276 | Soybean | cytosol | 13.12 | 43.74 |
| CDY30942 | Canola | nucleus | 31.25 | 41.55 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 39.0 | 41.39 |
| Bra019456.1-P | Field mustard | nucleus | 35.18 | 40.77 |
| CDY21223 | Canola | nucleus | 36.43 | 39.91 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 42.81 | 36.95 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 6.02 | 32.69 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 24.09 | 29.9 |
| TraesCS7B01G428200.1 | Wheat | mitochondrion | 6.08 | 27.95 |
| TraesCS7B01G430900.2 | Wheat | mitochondrion | 6.02 | 27.01 |
| TraesCS2B01G383300.2 | Wheat | plastid | 26.48 | 25.83 |
| TraesCS4B01G347300.1 | Wheat | cytosol, nucleus, plastid | 30.05 | 25.44 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0016891 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 |
| InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 | InterPro:P-loop_NTPase |
| InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom | InterPro:RNase_III_sf |
| SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 |
| SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS3B01G450600 | EnsemblPlants:TraesCS3B01G450600.3 | TIGR:cd00046 |
| TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:-:691267069..691276547
Molecular Weight (calculated)
186740.0 Da
IEP (calculated)
6.286
GRAVY (calculated)
-0.236
Length
1677 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEAEPESAP GRGGGGAGED AMDATGPAPA EAAPATVPDV NMNPLKRPSE SCAQGDEAES LKRQKTESQV FTPRRYQLDV FEVAKARNTI AMLDTGAGKT
0101: MIAVMLMKEF GEKIDKSNNN GKIIFLAPTV QLVTQQCEVI KTHTDFEVEL YCGASGVDHW TPQRWKEKVS KSQVMVMIPD VLLSALGKAF LSLDMVSLMI
0201: FDECHRATGK HPYSRIMKDY YHQSDHKPKV FGMTASPVIR KGVSSNLDCE VQFTELEKLL NAKIYAVADR AEIELCAPSA KEVDRYYDPK TVCFKDLSEE
0301: LGFLHSEYDA LITTLQNKPN YQNKESDEIA KESRRRLSNS SAKILYCIDD IGLLCASEAT KIYIERGQRK GWLKKASDAT NIQSVANSSF LLAEISALHL
0401: KFFEDMSRII DKHLQQGSNV LLNSESGCVE AIKTGYISPK LYELIQIFRS FSNCDHVRCL IFVDRKITAR AMERTMKKIG HLSHFTFSSL TGGSSSVDAL
0501: TPKMQKDTLD SFRSGKVNLL FTTDVAEEGI DVTDCSCVIR YDLPKTTRSY MQSRGRARQK DSQYMLMIER ENVKQNNLIS AILRSEKSMV ETALNRDSED
0601: LLPGFFPVEE KNEYLVGTTG AKVTAGSSVS VIAQYCDKLP GDKYDTTKPL FEFTNHGDGF VCTLTLPSSD MLPPLVGPKA RSKKKAKQLV CLDACKQLHQ
0701: LGVLTDSLCL SVEEPPLESV NKTDVLTSLA GVGTTKRKEL HGTTRVCGLS GTWASERTAV KLQGYRMKFL CDQVGQKYSD FVLLIDKTIA HEAANLDIDL
0801: FLHDKMVKAS VSPCGLFELD VQQIEQAKLF QALLFNGLFG KLFTGSKSSD VPWEFILNKD DTFIWNNPNM YLILPMDPTV ESHDISGINW RVIDEAATAV
0901: KLLRKIYSEE KMNIQGILDF DQNDEDLIHL ANTSCETHFL RNVVVLAVHT GKIYTALHVA DLSATSTFDG VSDEKGTEFH TFAEYFEKKY GIVLRHPSQP
1001: LLVLKPSHRP HNILSSKLRD EGNGEKKKGG TSDITKANNR VHMPPELLIP LNFSDDILRT FYLFPSLMHR IETLMLASQL KSEISYDDSN VSSFLILEAI
1101: TTLRCSEDFS MERLELLGDS VLKYVVSCHL FLKFPNMDEG QLTSSRVDII CNAALYGFGI EHKIQGYIRD AAFDPRRWLA PGQLSIHPVP CNCLVNSEVV
1201: TEDINVKVGQ LCDKGHRWMC SKTISDCVEA IIGAYYVEGG LRAAMAVLKW LGINVEVEEE LIGQFLSASV QTYLPKNDVI EKVEAKLGYA FLMKGLLLEA
1301: LTHPSLQESA EGYSYERLEF LGDAVLDILL TRHLFYSHKD TDEGELTDLR SASVNNENFA QLAVKHKLYQ FLQHSSGKLP ENITEYVDSL ENPSTDKLNL
1401: LSDAALRGPK VLGDVVESIA GAILIDRKLD LEVVWGIFKP LLSPIVTPEK LELPPFRELL EWCNKSGYFL GIKCTDGIKR TDGDKIEATL NVQLKETLLV
1501: RQGCGKSKKD AKAHAASMLL KDLEEEGLLV PKNASNTQQF QHHRNIFDAM DIQLSTPTRG KGSAGSKIAA SLDKPVDWAV RMSKGGPRAG LYEFCKKLQW
1601: PAPNFDCAKV EQSTPTPQGQ GFTFASTIKL HIPNSDVISL TGDCFADKKS AMDSAALLML YELQRRGRLQ VQEVHVS
0101: MIAVMLMKEF GEKIDKSNNN GKIIFLAPTV QLVTQQCEVI KTHTDFEVEL YCGASGVDHW TPQRWKEKVS KSQVMVMIPD VLLSALGKAF LSLDMVSLMI
0201: FDECHRATGK HPYSRIMKDY YHQSDHKPKV FGMTASPVIR KGVSSNLDCE VQFTELEKLL NAKIYAVADR AEIELCAPSA KEVDRYYDPK TVCFKDLSEE
0301: LGFLHSEYDA LITTLQNKPN YQNKESDEIA KESRRRLSNS SAKILYCIDD IGLLCASEAT KIYIERGQRK GWLKKASDAT NIQSVANSSF LLAEISALHL
0401: KFFEDMSRII DKHLQQGSNV LLNSESGCVE AIKTGYISPK LYELIQIFRS FSNCDHVRCL IFVDRKITAR AMERTMKKIG HLSHFTFSSL TGGSSSVDAL
0501: TPKMQKDTLD SFRSGKVNLL FTTDVAEEGI DVTDCSCVIR YDLPKTTRSY MQSRGRARQK DSQYMLMIER ENVKQNNLIS AILRSEKSMV ETALNRDSED
0601: LLPGFFPVEE KNEYLVGTTG AKVTAGSSVS VIAQYCDKLP GDKYDTTKPL FEFTNHGDGF VCTLTLPSSD MLPPLVGPKA RSKKKAKQLV CLDACKQLHQ
0701: LGVLTDSLCL SVEEPPLESV NKTDVLTSLA GVGTTKRKEL HGTTRVCGLS GTWASERTAV KLQGYRMKFL CDQVGQKYSD FVLLIDKTIA HEAANLDIDL
0801: FLHDKMVKAS VSPCGLFELD VQQIEQAKLF QALLFNGLFG KLFTGSKSSD VPWEFILNKD DTFIWNNPNM YLILPMDPTV ESHDISGINW RVIDEAATAV
0901: KLLRKIYSEE KMNIQGILDF DQNDEDLIHL ANTSCETHFL RNVVVLAVHT GKIYTALHVA DLSATSTFDG VSDEKGTEFH TFAEYFEKKY GIVLRHPSQP
1001: LLVLKPSHRP HNILSSKLRD EGNGEKKKGG TSDITKANNR VHMPPELLIP LNFSDDILRT FYLFPSLMHR IETLMLASQL KSEISYDDSN VSSFLILEAI
1101: TTLRCSEDFS MERLELLGDS VLKYVVSCHL FLKFPNMDEG QLTSSRVDII CNAALYGFGI EHKIQGYIRD AAFDPRRWLA PGQLSIHPVP CNCLVNSEVV
1201: TEDINVKVGQ LCDKGHRWMC SKTISDCVEA IIGAYYVEGG LRAAMAVLKW LGINVEVEEE LIGQFLSASV QTYLPKNDVI EKVEAKLGYA FLMKGLLLEA
1301: LTHPSLQESA EGYSYERLEF LGDAVLDILL TRHLFYSHKD TDEGELTDLR SASVNNENFA QLAVKHKLYQ FLQHSSGKLP ENITEYVDSL ENPSTDKLNL
1401: LSDAALRGPK VLGDVVESIA GAILIDRKLD LEVVWGIFKP LLSPIVTPEK LELPPFRELL EWCNKSGYFL GIKCTDGIKR TDGDKIEATL NVQLKETLLV
1501: RQGCGKSKKD AKAHAASMLL KDLEEEGLLV PKNASNTQQF QHHRNIFDAM DIQLSTPTRG KGSAGSKIAA SLDKPVDWAV RMSKGGPRAG LYEFCKKLQW
1601: PAPNFDCAKV EQSTPTPQGQ GFTFASTIKL HIPNSDVISL TGDCFADKKS AMDSAALLML YELQRRGRLQ VQEVHVS
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.