Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G411200.6 | Wheat | nucleus | 94.93 | 97.49 |
| TraesCS3B01G450600.3 | Wheat | nucleus | 97.14 | 97.2 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 90.35 | 89.97 |
| Os01t0909200-01 | Rice | cytosol | 69.85 | 70.99 |
| KXG33962 | Sorghum | nucleus | 68.12 | 68.98 |
| Zm00001d042432_P007 | Maize | cytosol | 67.16 | 67.57 |
| GSMUA_Achr10P... | Banana | nucleus | 21.16 | 53.54 |
| Solyc08g067210.2.1 | Tomato | nucleus | 39.99 | 46.92 |
| KRH61605 | Soybean | nucleus | 46.25 | 46.36 |
| GSMUA_Achr10P... | Banana | cytosol | 11.62 | 46.1 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 43.5 | 44.87 |
| KRH52276 | Soybean | cytosol | 13.17 | 43.94 |
| CDY30942 | Canola | nucleus | 31.41 | 41.79 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 39.15 | 41.58 |
| Bra019456.1-P | Field mustard | nucleus | 35.34 | 40.98 |
| CDY21223 | Canola | nucleus | 36.77 | 40.3 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 42.91 | 37.06 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 6.08 | 32.69 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 24.97 | 29.95 |
| TraesCS7A01G513500.1 | Wheat | nucleus | 5.48 | 29.02 |
| TraesCS7A01G512700.1 | Wheat | mitochondrion | 6.14 | 28.37 |
| TraesCS2A01G364700.2 | Wheat | cytosol | 26.4 | 27.3 |
| TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 6.02 | 27.22 |
| TraesCS5A01G516000.1 | Wheat | cytosol, nucleus, plastid | 30.21 | 25.71 |
Protein Annotations
| Gene3D:1.10.1520.10 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 |
| InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0016891 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
| PFAM:PF03368 | PFAM:PF04851 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 |
| SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS3A01G415400 | EnsemblPlants:TraesCS3A01G415400.2 |
| TIGR:cd00046 | TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:658706220..658716057
Molecular Weight (calculated)
186914.0 Da
IEP (calculated)
6.112
GRAVY (calculated)
-0.240
Length
1678 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEAEPESAP GGGEAGEDAM DATGPAAAPA EAEAAAPVPD VNMNPLKRPS ESCAQGDEAD GQKRQKTESQ VFTPRRYQLD VFEVAKARNT IAMLDTGAGK
0101: TMIAVMLMKE FGKKIDKSNN NGKIVFLAPT VQLVTQQCEV IKTHTDFEVE LYCGASGVDH WTPQRWKEKI SKSQVMMMIP DVLLSALGKA FLSLDMVSLM
0201: IFDECHRATG KHPYSRIMKD YYHQSDHKPK VFGMTASPVI RKGVSSNLDC EVQFTELEKL LNAKIYTVAD RAEIELCAPS AKEVDRYYDP KTVCFKDLSE
0301: ELGLLHSEYD ALITTLQNKP NCQNKESDEI AKESRRRLSN SSAKILYCID DIGLLCASEA TKIYIERGQR KGWLKKASDA TNIQSVANSS FLLAEISVLH
0401: LKFFEDMSCI IDKHLQQGSD VLLNSESGCV EAIKTGYISP KLYELIQIFH SFSNCDHVRC LIFVDRKITA RAMERTMKKI GHLSHFTFSS LTGGSSSVDA
0501: LTPKMQKDTL DSFRSGKVNL LFTTDVAEEG IDVTDCSCVI RFDLPKTTRS YMQSRGRARQ KDSQYILMIE RENVKQNNLI SAILRSEKSM VETALNRDSE
0601: DLLPGFFPVE EKNEYLVGTT GAKVTAGSSV SVIVQYCDKL PGDKYDTTKP LFEFTNHGDG FVCTLTLPSS DMLPPLVGPK ARNKKKAKQL VCLDACKQLH
0701: QLGVLTDSLC LSVEEPPLES VNKTDVLTSL AGVGTTKRKE LHGTTRVCGL SGTWASERTA VKLQGYRMKF LCDQVGQKYS DFVLLIDKTI AHEAANLDID
0801: LFLHDKMVKA SVSPCGLFEL DVQQMEQAKL FQALLFNGLF GKLFTGSKSS DVPREFILNK DDTFIWNNPN MYLILPMDPT VESHDITCIN WRVIDEAATA
0901: VKLLRKIYSE EKMNIQGILD FDQNDEDLIH FANTSCETHF LRNVVVLAVH TGKIYTALHV ADLSANSTFD GVSDEKGTEF RTFAEYFEKK YGIVLRHPSQ
1001: PLLVLKPSHR PHNILSSKLR DEGNGEKKKG GTSDITKANN RVHMPPELLI PLNFSDDILR TFYLFPSLMH RIEALMLASQ LKSEISYDDS NVSSFLILEA
1101: ITTLRCSEDF SMERLELLGD SVLKYVVSCH LFLKFPNMDE GQLTSSRVDI ISNAALYGFG IEHKIQGYIR DAAFDPRRWL APGQLSIHPV PCNCQVNSEV
1201: VTEDINVKVG QLCDKGHRWM CSKTISDCVE AIIGAYYVEG GLRAAMAVLK WLGINVEVEE ELIGQFLSAS VQTYLPKNDV IEKVEAKLGY VFLMKGLLLE
1301: ALTHPSLQES AEGYSYERLE FLGDAVLDIL LTRHLFSSHK DTDEGELTDL RSASVNNENF AQLAVKHKLY QFLQHSSGKL PENITEYVDS LENSSTDKLN
1401: LLSDAALRGP KVLGDVVESI AGAILIDRKL DLEVVWGIFK PLLSPIVTPE KLELPPFREL LEWCNKSGYF LGIKCTDGIK RTDGDKIEAT LDVQLKETLL
1501: VRQGCGKSKK DAKAHAASML LKDLEEEGLI VPKNASNTQQ FQDHRNIFDA MDIQLSTPTR GKRSAGSKIA ASLDKPVDWP VRMSKGGPRA GLYEFCKKLQ
1601: WPAPNFDCAK VEQSTPTPQG QGFTFASTIK LHIPNSDVIS LTGDCFADKK SAMDSAALLM LYELQQRGRL QVQEIRLP
0101: TMIAVMLMKE FGKKIDKSNN NGKIVFLAPT VQLVTQQCEV IKTHTDFEVE LYCGASGVDH WTPQRWKEKI SKSQVMMMIP DVLLSALGKA FLSLDMVSLM
0201: IFDECHRATG KHPYSRIMKD YYHQSDHKPK VFGMTASPVI RKGVSSNLDC EVQFTELEKL LNAKIYTVAD RAEIELCAPS AKEVDRYYDP KTVCFKDLSE
0301: ELGLLHSEYD ALITTLQNKP NCQNKESDEI AKESRRRLSN SSAKILYCID DIGLLCASEA TKIYIERGQR KGWLKKASDA TNIQSVANSS FLLAEISVLH
0401: LKFFEDMSCI IDKHLQQGSD VLLNSESGCV EAIKTGYISP KLYELIQIFH SFSNCDHVRC LIFVDRKITA RAMERTMKKI GHLSHFTFSS LTGGSSSVDA
0501: LTPKMQKDTL DSFRSGKVNL LFTTDVAEEG IDVTDCSCVI RFDLPKTTRS YMQSRGRARQ KDSQYILMIE RENVKQNNLI SAILRSEKSM VETALNRDSE
0601: DLLPGFFPVE EKNEYLVGTT GAKVTAGSSV SVIVQYCDKL PGDKYDTTKP LFEFTNHGDG FVCTLTLPSS DMLPPLVGPK ARNKKKAKQL VCLDACKQLH
0701: QLGVLTDSLC LSVEEPPLES VNKTDVLTSL AGVGTTKRKE LHGTTRVCGL SGTWASERTA VKLQGYRMKF LCDQVGQKYS DFVLLIDKTI AHEAANLDID
0801: LFLHDKMVKA SVSPCGLFEL DVQQMEQAKL FQALLFNGLF GKLFTGSKSS DVPREFILNK DDTFIWNNPN MYLILPMDPT VESHDITCIN WRVIDEAATA
0901: VKLLRKIYSE EKMNIQGILD FDQNDEDLIH FANTSCETHF LRNVVVLAVH TGKIYTALHV ADLSANSTFD GVSDEKGTEF RTFAEYFEKK YGIVLRHPSQ
1001: PLLVLKPSHR PHNILSSKLR DEGNGEKKKG GTSDITKANN RVHMPPELLI PLNFSDDILR TFYLFPSLMH RIEALMLASQ LKSEISYDDS NVSSFLILEA
1101: ITTLRCSEDF SMERLELLGD SVLKYVVSCH LFLKFPNMDE GQLTSSRVDI ISNAALYGFG IEHKIQGYIR DAAFDPRRWL APGQLSIHPV PCNCQVNSEV
1201: VTEDINVKVG QLCDKGHRWM CSKTISDCVE AIIGAYYVEG GLRAAMAVLK WLGINVEVEE ELIGQFLSAS VQTYLPKNDV IEKVEAKLGY VFLMKGLLLE
1301: ALTHPSLQES AEGYSYERLE FLGDAVLDIL LTRHLFSSHK DTDEGELTDL RSASVNNENF AQLAVKHKLY QFLQHSSGKL PENITEYVDS LENSSTDKLN
1401: LLSDAALRGP KVLGDVVESI AGAILIDRKL DLEVVWGIFK PLLSPIVTPE KLELPPFREL LEWCNKSGYF LGIKCTDGIK RTDGDKIEAT LDVQLKETLL
1501: VRQGCGKSKK DAKAHAASML LKDLEEEGLI VPKNASNTQQ FQDHRNIFDA MDIQLSTPTR GKRSAGSKIA ASLDKPVDWP VRMSKGGPRA GLYEFCKKLQ
1601: WPAPNFDCAK VEQSTPTPQG QGFTFASTIK LHIPNSDVIS LTGDCFADKK SAMDSAALLM LYELQQRGRL QVQEIRLP
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.