Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | KRH52961 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | KRH62246 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11802 | Soybean | cytosol | 18.1 | 89.82 |
| KRH36816 | Soybean | cytosol | 82.6 | 82.2 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 58.77 | 59.57 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 52.69 | 55.1 |
| Bra031999.1-P | Field mustard | nucleus | 49.51 | 54.82 |
| Solyc06g048960.2.1 | Tomato | vacuole | 54.1 | 54.68 |
| AT3G03300.1 | Thale cress | nucleus | 53.32 | 54.32 |
| CDY50692 | Canola | nucleus | 53.32 | 54.28 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 53.11 | 54.11 |
| PGSC0003DMT400042918 | Potato | nucleus | 42.15 | 53.99 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 49.58 | 53.23 |
| Solyc11g008520.1.1 | Tomato | nucleus | 53.47 | 52.94 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 25.88 | 46.45 |
| Os03t0583900-01 | Rice | nucleus | 43.92 | 44.04 |
| OQU91441 | Sorghum | nucleus | 42.72 | 43.58 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.23 | 43.15 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 42.65 | 43.1 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 42.57 | 42.97 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.21 | 41.71 |
| HORVU5Hr1G019300.8 | Barley | plastid | 42.36 | 40.61 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 3.89 | 38.46 |
| Zm00001d013797_P006 | Maize | nucleus | 18.95 | 36.46 |
| KXG38096 | Sorghum | plastid | 19.02 | 34.58 |
| KRH03544 | Soybean | nucleus | 32.25 | 27.87 |
| KRH20103 | Soybean | nucleus | 32.18 | 27.79 |
| KRH61605 | Soybean | nucleus | 30.13 | 25.45 |
| KRH52276 | Soybean | cytosol | 8.56 | 24.06 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 32.53 | 23.65 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 32.46 | 23.57 |
| KRH14361 | Soybean | cytosol | 5.73 | 23.48 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100805537 | Gene3D:2.170.260.10 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| EMBL:ACUP02005397 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | EnsemblPlantsGene:GLYMA_09G025400 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0030422 | GO:GO:0031047 |
| GO:GO:0040029 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | UniProt:I1L0G0 |
| InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR036389 |
| InterPro:IPR038248 | EnsemblPlants:KRH36818 | ProteinID:KRH36818 | ProteinID:KRH36818.1 | InterPro:P-loop_NTPase | InterPro:PAZ_dom |
| InterPro:PAZ_dom_sf | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 |
| ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00535 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000233C1AA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:2055852..2071368
Molecular Weight (calculated)
160395.0 Da
IEP (calculated)
7.542
GRAVY (calculated)
-0.186
Length
1414 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEVLPVEMD SNTQQQQKVI SADVLSFARS YQLEALDNAI RENTIVYLET GSGKTLIAVM LLRSYAHHLR KPSPQIAVFL VPKVVLVSQQ AEAVKKHTDL
0101: KVGLYWGDMG IDFWDAATWK QEVQKYEVFV MTPAILLNCL RHSFLKLNLI KVLIMDECHH ARGKHPYASI MTEFYHHQLN SGISDLPRIF GMTASPIKSK
0201: VGNCELSWSE NIRKLMTLMH SKVYTCVSEA VLTEFIPTST PKFKFYQGNE VQSVLFEDLA FKLKMLKEQH ESNLKSSDFT KSAAEFARRR TKKIFSALIF
0301: CLDELGVWLA LKAAESLSSN DIQLFSWGHS GDTVVKNFIS AGVQTLKTYL PCGPQWSIGD NIKYDVEMEL LSSKVCCLID SILEYRGLTD MRCIIFVERV
0401: ITAVVLRDLL NTLLPKYNSW KTKFIAGQNF GLQNQSRKKQ NEIVEEFRMG LVNIIVATSI LEEGLDVESC NLVIRFDPCH TVCSFIQSRG RARMQNSDYI
0501: LMVKSGDSVT CSRLAKYLAS GDIMRKESLR HSSLPCDPLE EDRFDKETYR VASTEAFANL SSSISLIHLY CSRLPADGYF KPTLRWDKET GTLYLPKSCP
0601: LQPIRVEGDK KILKNIACLE ACKQLHKIGA LSDNLVPDIV MEEAEVEELG NEPYDENQPT FVPFGLVNSV SNNSQTVYHC YFMEFNNKFS YDVSVQDIFL
0701: LMRIELDPEI GCMQFDMGFD RGSLSVNFRY KGTINLSPDQ VLLCKKFQVT ILRILIDHDM NKLTAGLDRC YLEDDLEIDY LLLPAMGKGK YTAINWLAVN
0801: SVNPSEVSCK YHEPHIRTKS GLVCSCKLQN ALVCTSHPIG KISFYIATGT MELDGNSPME LRGGGVTTYK KYYEQHHGIQ LQFEHQRLLK ARHIFQVKNH
0901: CHGRKQGKEG EVSKAFVELP PELCSIVMMP ISDSLIYSYS FIPSIMHRFE SLLGAFNLKK MHLDHCARNE IQTIKVLEAI TTKRCKEAFH YESLETLGDS
1001: FLKYAASQQL FKTYHNHHEG LLSLKREKII SNAALCKLGC SSGLPGFIRN EPFDPNTWII PGDKPRSFKL KELVAKGKTI YVSGKRKLRQ KIVADVVEAL
1101: IGAFLSTGGE KAALLFMDWV GIKVSFNKIP YDRHFDIQPE KLVNVSFLES QLNYSFHDRS LLVEAVTHGS YMLPEVPRCY QRLEFLGDSV LDYLITWHLY
1201: NKYPGMTPGQ LTDMRSASVN NDCYAWSAIK HGLHKHVLHA SQELHMHVSA TLNKFDKLSS LSTFGYEAET SLPKVLGDIV ESLAGAILVD SGYNKEVVWQ
1301: SIRPLLEPLV TPETLKLHPI RELNELCQKR SYKIILEDVS RKDGLTYYRM EVEADGIIHK YEYKGDALRD TAKKIVCKEI LNSLKDGGAH KDTAKKIVCE
1401: EKLNSLKEGE SNGA
0101: KVGLYWGDMG IDFWDAATWK QEVQKYEVFV MTPAILLNCL RHSFLKLNLI KVLIMDECHH ARGKHPYASI MTEFYHHQLN SGISDLPRIF GMTASPIKSK
0201: VGNCELSWSE NIRKLMTLMH SKVYTCVSEA VLTEFIPTST PKFKFYQGNE VQSVLFEDLA FKLKMLKEQH ESNLKSSDFT KSAAEFARRR TKKIFSALIF
0301: CLDELGVWLA LKAAESLSSN DIQLFSWGHS GDTVVKNFIS AGVQTLKTYL PCGPQWSIGD NIKYDVEMEL LSSKVCCLID SILEYRGLTD MRCIIFVERV
0401: ITAVVLRDLL NTLLPKYNSW KTKFIAGQNF GLQNQSRKKQ NEIVEEFRMG LVNIIVATSI LEEGLDVESC NLVIRFDPCH TVCSFIQSRG RARMQNSDYI
0501: LMVKSGDSVT CSRLAKYLAS GDIMRKESLR HSSLPCDPLE EDRFDKETYR VASTEAFANL SSSISLIHLY CSRLPADGYF KPTLRWDKET GTLYLPKSCP
0601: LQPIRVEGDK KILKNIACLE ACKQLHKIGA LSDNLVPDIV MEEAEVEELG NEPYDENQPT FVPFGLVNSV SNNSQTVYHC YFMEFNNKFS YDVSVQDIFL
0701: LMRIELDPEI GCMQFDMGFD RGSLSVNFRY KGTINLSPDQ VLLCKKFQVT ILRILIDHDM NKLTAGLDRC YLEDDLEIDY LLLPAMGKGK YTAINWLAVN
0801: SVNPSEVSCK YHEPHIRTKS GLVCSCKLQN ALVCTSHPIG KISFYIATGT MELDGNSPME LRGGGVTTYK KYYEQHHGIQ LQFEHQRLLK ARHIFQVKNH
0901: CHGRKQGKEG EVSKAFVELP PELCSIVMMP ISDSLIYSYS FIPSIMHRFE SLLGAFNLKK MHLDHCARNE IQTIKVLEAI TTKRCKEAFH YESLETLGDS
1001: FLKYAASQQL FKTYHNHHEG LLSLKREKII SNAALCKLGC SSGLPGFIRN EPFDPNTWII PGDKPRSFKL KELVAKGKTI YVSGKRKLRQ KIVADVVEAL
1101: IGAFLSTGGE KAALLFMDWV GIKVSFNKIP YDRHFDIQPE KLVNVSFLES QLNYSFHDRS LLVEAVTHGS YMLPEVPRCY QRLEFLGDSV LDYLITWHLY
1201: NKYPGMTPGQ LTDMRSASVN NDCYAWSAIK HGLHKHVLHA SQELHMHVSA TLNKFDKLSS LSTFGYEAET SLPKVLGDIV ESLAGAILVD SGYNKEVVWQ
1301: SIRPLLEPLV TPETLKLHPI RELNELCQKR SYKIILEDVS RKDGLTYYRM EVEADGIIHK YEYKGDALRD TAKKIVCKEI LNSLKDGGAH KDTAKKIVCE
1401: EKLNSLKEGE SNGA
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.