Factsheet for Solyc07g049150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001808	Potato	cytosol	82.84	88.45
Solyc05g041920.2.1	Tomato	cytosol	50.75	51.13
Solyc05g024210.1.1	Tomato	cytosol	50.0	39.88
Solyc07g049160.2.1	Tomato	mitochondrion	42.54	38.91
VIT_12s0059g01120.t01	Wine grape	cytosol	39.18	36.59
Solyc10g006210.1.1	Tomato	cytosol	14.18	35.19
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	36.57	34.51
CDY09765	Canola	cytosol, nucleus, peroxisome	36.57	34.51
CDX90592	Canola	cytosol, nucleus, peroxisome	36.57	34.51
AT4G15417.2	Thale cress	mitochondrion	36.94	34.26
Bra039552.1-P	Field mustard	cytosol	35.45	33.57
CDY48286	Canola	cytosol	34.33	32.51
CDY22924	Canola	cytosol	34.33	32.51
EES13704	Sorghum	cytosol	33.96	31.27
Os06t0358800-01	Rice	cytosol	34.7	31.1
TraesCS7D01G344100.1	Wheat	cytosol	34.33	29.77
TraesCS7B01G248100.1	Wheat	cytosol	33.96	29.45
TraesCS7A01G336500.1	Wheat	cytosol	33.58	28.85
TraesCS7D01G344200.1	Wheat	cytosol	33.21	28.43
Zm00001d032362_P002	Maize	mitochondrion	32.46	26.44
HORVU7Hr1G082860.4	Barley	plastid	34.33	25.63
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	33.96	23.27
TraesCS2D01G479300.1	Wheat	plastid	29.85	23.12
Solyc11g008530.1.1	Tomato	mitochondrion	26.12	5.32
Solyc11g008540.1.1	Tomato	mitochondrion	26.12	5.18
Solyc06g048960.2.1	Tomato	vacuole	26.87	5.15
Solyc11g008520.1.1	Tomato	nucleus	27.24	5.11
Solyc08g067210.2.1	Tomato	nucleus	26.12	4.9
Solyc07g005030.2.1	Tomato	cytosol	26.87	4.69
Solyc10g005130.2.1	Tomato	nucleus	27.61	3.92
GSMUA_Achr10P...	Banana	extracellular	1.49	2.14
GSMUA_Achr9P22470_001	Banana	cytosol	1.87	1.31
Solyc08g067200.1.1	Tomato	cytosol	0.37	0.34

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029
GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	UniProt:K4CF19
PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065
EnsemblPlantsGene:Solyc07g049150.2	EnsemblPlants:Solyc07g049150.2.1	UniParc:UPI000276B04C	InterPro:dsRBD_dom	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:59415969..59419052

Molecular Weight (calculated)

30918.9 Da

IEP (calculated)

5.059

GRAVY (calculated)

-0.360

Length

268 amino acids

Sequence
(BLAST)

001: MDYTSHMVYA FSFSSWTAME EQSFQQRERL VEEITGYKFK NPDLLHQAFT HPSVPQNWAS NDRMEYLGDS VLGLMIAKEH YFAYSDLSSE DLTDLRSVNV
101: DTEKLARVAI KYNLQDHLRC QKHLFKEMRV EEFRSATLEY PLNSLGCINP PKVLADIVEA LIGAIYIDCN FSIDITWQAI KNMLQPLITP ETLEIQPITK
201: IMELCQKNKL TINIVDNWDE TGEFECIVDG KFVAKGKSSQ NKATARNRAA YNAYELVIEN LRMKTPDH

Best Arabidopsis Sequence Match ( AT4G15417.1 )
(BLAST)

001: MGSQLSNAID GKDNTKTIGS ADPDQLMEIE SLEKILNYKF KDKSLLLKAF TDASYVDDKS ESYELLELLG DSILNMGIIY DFIKLYPKEA PGPLTKLRAV
101: NVDTEKLARV AVNHQLYSYL RHKKPLLEEQ ILEFVEAMEK YPLHSNGLLK VPKVLADIVE STIGAIFMDC NSTETVWKVI KPLLEPIIHL DKMKSHPMTE
201: LNEMCQKRNL KLTSKDTWEE NQTYCFHIED KFVGCGHHPV KKETARNFAA KNAIDNFAKF FGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.