Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 83.33 | 28.37 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 80.56 | 10.38 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 51.39 | 4.63 |
| GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 31.94 | 3.37 |
| GSMUA_Achr8P12350_001 | Banana | nucleus | 34.03 | 2.7 |
| GSMUA_Achr10P... | Banana | extracellular | 2.08 | 1.6 |
| Solyc08g067200.1.1 | Tomato | cytosol | 2.78 | 1.37 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 3.47 | 1.31 |
| GSMUA_Achr10P... | Banana | nucleus | 3.47 | 0.75 |
| GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 2.08 | 0.74 |
| GSMUA_Achr2P15170_001 | Banana | cytosol | 1.39 | 0.59 |
| GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 0.69 | 0.29 |
| VIT_11s0149g00100.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P28100_001 | EnsemblPlants:GSMUA_Achr10T28100_001 | EnsemblPlantsGene:GSMUA_Achr10G28100_001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:P-loop_NTPase | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | PFAM:PF00271 | PFscan:PS51194 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0002952CF6 | UniProt:M0RM34 | MapMan:35.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G28100_001]
Coordinates
chr10:-:31024041..31024563
Molecular Weight (calculated)
16216.8 Da
IEP (calculated)
8.844
GRAVY (calculated)
0.212
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSQVVCLIF VERNITAKVL ERFIKKVCFL SHFTVSYLAG GSSSVDALTP KTQKDILDSF RSGKANLLFT TDVAEEGTDV PDCSCVISFD LPKTARSYIQ
101: SHGRARQAGS HFRLQFILDV KLLFRLNLCR LRIACNFFSV EIYI
101: SHGRARQAGS HFRLQFILDV KLLFRLNLCR LRIACNFFSV EIYI
0001: MDSKIFNPEE REGVEKFATT VKEGPILYNP SPSCSLELKE KLETSHLKFD ASLRRLQELG KDSFLNMDNK FETYQKRLSI DYREILHCLD NLGLICAHLA
0101: AEVCLEKISD TKEESETYKE CSMVCKEFLE DILSTIGVYL PQDDKSLVDL QQNHLSAVIS GHVSPKLKEL FHLLDSFRGD KQKQCLILVE RIITAKVIER
0201: FVKKEASLAY LNVLYLTENN PSTNVSAQKM QIEIPDLFQH GKVNLLFITD VVEEGFQVPD CSCMVCFDLP KTMCSYSQSQ KHAKQSNSKS IMFLERGNPK
0301: QRDHLHDLMR REVLIQDPEA PNLKSCPPPV KNGHGVKEIG SMVIPDSNIT VSEEAASTQT MSDPPSRNEQ LPPCKKLRLD NNLLQSNGKE KVASSKSKSS
0401: SSAAGSKKRK ELHGTTCANA LSGTWGENID GATFQAYKFD FCCNISGEVY SSFSLLLEST LAEDVGKVEM DLYLVRKLVK ASVSPCGQIR LSQEELVKAK
0501: YFQQFFFNGM FGKLFVGSKS QGTKREFLLQ TDTSSLWHPA FMFLLLPVET NDLASSATID WSAINSCASI VEFLKKNSLL DLRDSDGNQC NTSSGQEVLL
0601: DDKMEETNLI HFANASSDKN SLEELVVIAI HTGRIYSIVE AVSDSSAMSP FEVDASSGYA TYAEYFNKKY GIVLAHPNQP LMKLKQSHHA HNLLVDFNEE
0701: MVVKTEPKAG NVRKRKPNIH AHLPPELLAR IDVPRAVLKS IYLLPSVMHR LESLMLASQL REEIDCSIDN FSISSTSILE AVTTLTCPES FSMERLELLG
0801: DSVLKYVASC HLFLKYPDKD EGQLSRQRQS IISNSNLHRL TTSRKLQGYI RNGAFEPRRW TAPGQFSLFP VPCKCGIDTR EVPLDPKFFT ENMTIKIGKS
0901: CDMGHRWVVS KSVSDCAEAL IGAYYVSGGL SASLHMMKWL GIDVDFDPNL VVEAINRVSL RCYIPKEDEL IELERKIQHE FSAKFLLKEA ITHSSLRESY
1001: SYERLEFLGD SVLDFLITRH LFNTYEQTGP GEMTDLRSAC VNNENFAQVA VKNNLHTHLQ RCATVLETQI NDYLMSFQKP DETGRSIPSI QGPKALGDVV
1101: ESIAGALLID TRLDLDQVWR VFEPLLSPLV TPDKLQLPPY RELNELCDSL GYFFRVKCSN DGVKAQATIQ LQLDDVLLTG DGSEQTNKLA LGKAASHLLT
1201: QLEKRNISRK TSLGDNQSSM DVNLACNHSD RETLTSETTE IQSIVIPFIG PINMKKGGPR GTLHEFCKKH LWPMPTFDTS EEKSRTPFEF IDGGEKRTSF
1301: SSFTSTITLR IPNREAVMYA GEARPDKKSS FDSAVVELLY ELERRKIVII QK
0101: AEVCLEKISD TKEESETYKE CSMVCKEFLE DILSTIGVYL PQDDKSLVDL QQNHLSAVIS GHVSPKLKEL FHLLDSFRGD KQKQCLILVE RIITAKVIER
0201: FVKKEASLAY LNVLYLTENN PSTNVSAQKM QIEIPDLFQH GKVNLLFITD VVEEGFQVPD CSCMVCFDLP KTMCSYSQSQ KHAKQSNSKS IMFLERGNPK
0301: QRDHLHDLMR REVLIQDPEA PNLKSCPPPV KNGHGVKEIG SMVIPDSNIT VSEEAASTQT MSDPPSRNEQ LPPCKKLRLD NNLLQSNGKE KVASSKSKSS
0401: SSAAGSKKRK ELHGTTCANA LSGTWGENID GATFQAYKFD FCCNISGEVY SSFSLLLEST LAEDVGKVEM DLYLVRKLVK ASVSPCGQIR LSQEELVKAK
0501: YFQQFFFNGM FGKLFVGSKS QGTKREFLLQ TDTSSLWHPA FMFLLLPVET NDLASSATID WSAINSCASI VEFLKKNSLL DLRDSDGNQC NTSSGQEVLL
0601: DDKMEETNLI HFANASSDKN SLEELVVIAI HTGRIYSIVE AVSDSSAMSP FEVDASSGYA TYAEYFNKKY GIVLAHPNQP LMKLKQSHHA HNLLVDFNEE
0701: MVVKTEPKAG NVRKRKPNIH AHLPPELLAR IDVPRAVLKS IYLLPSVMHR LESLMLASQL REEIDCSIDN FSISSTSILE AVTTLTCPES FSMERLELLG
0801: DSVLKYVASC HLFLKYPDKD EGQLSRQRQS IISNSNLHRL TTSRKLQGYI RNGAFEPRRW TAPGQFSLFP VPCKCGIDTR EVPLDPKFFT ENMTIKIGKS
0901: CDMGHRWVVS KSVSDCAEAL IGAYYVSGGL SASLHMMKWL GIDVDFDPNL VVEAINRVSL RCYIPKEDEL IELERKIQHE FSAKFLLKEA ITHSSLRESY
1001: SYERLEFLGD SVLDFLITRH LFNTYEQTGP GEMTDLRSAC VNNENFAQVA VKNNLHTHLQ RCATVLETQI NDYLMSFQKP DETGRSIPSI QGPKALGDVV
1101: ESIAGALLID TRLDLDQVWR VFEPLLSPLV TPDKLQLPPY RELNELCDSL GYFFRVKCSN DGVKAQATIQ LQLDDVLLTG DGSEQTNKLA LGKAASHLLT
1201: QLEKRNISRK TSLGDNQSSM DVNLACNHSD RETLTSETTE IQSIVIPFIG PINMKKGGPR GTLHEFCKKH LWPMPTFDTS EEKSRTPFEF IDGGEKRTSF
1301: SSFTSTITLR IPNREAVMYA GEARPDKKSS FDSAVVELLY ELERRKIVII QK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.