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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY54644 Canola cytosol 100.0 100.0
AT3G20420.1 Thale cress plastid 76.12 65.22
VIT_19s0090g00940.t01 Wine grape cytosol 53.43 53.12
KRH14361 Soybean cytosol 53.13 51.59
PGSC0003DMT400033487 Potato cytosol 50.15 45.78
GSMUA_Achr7P11130_001 Banana cytosol, nucleus, plastid 44.78 43.99
Solyc12g014410.1.1 Tomato cytosol, nucleus, plastid 49.55 42.46
GSMUA_Achr2P15170_001 Banana cytosol 42.99 42.35
Os05t0271300-00 Rice cytosol, nucleus, plastid 39.1 41.32
TraesCS7A01G513500.1 Wheat nucleus 38.81 41.01
TraesCS7A01G512700.1 Wheat mitochondrion 43.88 40.5
TraesCS7D01G398600.2 Wheat mitochondrion, nucleus 44.48 40.05
TraesCS7D01G502800.1 Wheat mitochondrion, nucleus 43.88 39.95
TraesCS7D01G504300.3 Wheat mitochondrion 43.88 39.73
TraesCS7B01G428200.1 Wheat mitochondrion 43.28 39.73
TraesCS7A01G513400.1 Wheat cytosol, mitochondrion, nucleus, plastid 43.88 39.62
TraesCS7B01G430900.2 Wheat mitochondrion 44.18 39.57
Zm00001d009879_P002 Maize plastid 43.88 39.1
TraesCSU01G086900.1 Wheat mitochondrion 42.39 38.27
GSMUA_Achr7P11120_001 Banana cytosol, nucleus, plastid 45.97 37.84
HORVU7Hr1G115000.1 Barley nucleus 20.3 36.17
HORVU7Hr1G115100.2 Barley plastid 42.69 35.05
Bra012789.1-P Field mustard cytosol, nucleus, peroxisome 28.36 33.45
KXG21693 Sorghum plastid 43.88 33.26
Bra039552.1-P Field mustard cytosol 27.16 32.16
Os01t0551100-01 Rice cytosol 24.18 31.64
Bra019456.1-P Field mustard nucleus 28.06 6.5
Bra033293.1-P Field mustard cytosol, nucleus, plastid 31.94 5.8
Bra031999.1-P Field mustard nucleus 21.49 5.64
Bra002293.1-P Field mustard nucleus, plastid 25.67 5.24
Protein Annotations
Gene3D:1.10.1520.10MapMan:12.5.1.12Gene3D:3.30.160.20EnsemblPlantsGene:Bra035784EnsemblPlants:Bra035784.1EnsemblPlants:Bra035784.1-P
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004518GO:GO:0004525
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0006139GO:GO:0006396GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787
GO:GO:0090501GO:GO:0090502InterPro:IPR000999InterPro:IPR014720InterPro:IPR036389UniProt:M4F3Y4
PFAM:PF00035PFAM:PF00636PFAM:PF14709ScanProsite:PS00517PFscan:PS50137PFscan:PS50142
PANTHER:PTHR14950PANTHER:PTHR14950:SF35InterPro:RNase_III_domInterPro:RNase_III_sfSMART:SM00358SMART:SM00535
SUPFAM:SSF54768SUPFAM:SSF69065UniParc:UPI0002547B01InterPro:dsRBD_domSEG:seg:
Description
AT3G20420 (E=5e-132) RTL2, ATRTL2 | RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III
Coordinates
chrA05:+:17181304..17182791
Molecular Weight (calculated)
37933.5 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.303
Length
335 amino acids
Sequence
(BLAST)
001: MESLQAVEKI VNYSFANKSL LEEALTHTSC VDFPSYERLE FVGDSAVGLA LTNYLYLTYP NAEPHELSQL RAANVSTEKF ARVALKHGLY RFLRRNAPSL
101: DEKVTEFSEA VCKEDDSVYY GGLVKAPKVL ADLLESVAGA VYIDVNFDLQ RFWVIFRGLL EPIFTLDDLQ QQPQPISMLF QLCHKHNKRL AIRYLKEGKR
201: IIAGVYLDDQ LFASGSAENK DTAKLLAAKE ALGKFSECTP IAMVIDEGSV EVEVEDAKRK LYEICSKKKW PKPIYSVEEE RGSANEKRFV CSARIKIPSE
301: ESPLYMKGDE ESKKKKAENS SAYHMIIALR KSNYL
Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)
001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
Arabidopsis Description
RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.