Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra014370.1-P | |
Bra018126.1-P | |
Bra030909.1-P | |
Bra032130.1-P | |
Bra035784.1-P | |
Bra037960.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY54644 | Canola | cytosol | 100.0 | 100.0 |
AT3G20420.1 | Thale cress | plastid | 76.12 | 65.22 |
VIT_19s0090g00940.t01 | Wine grape | cytosol | 53.43 | 53.12 |
KRH14361 | Soybean | cytosol | 53.13 | 51.59 |
PGSC0003DMT400033487 | Potato | cytosol | 50.15 | 45.78 |
GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 44.78 | 43.99 |
Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 49.55 | 42.46 |
GSMUA_Achr2P15170_001 | Banana | cytosol | 42.99 | 42.35 |
Os05t0271300-00 | Rice | cytosol, nucleus, plastid | 39.1 | 41.32 |
TraesCS7A01G513500.1 | Wheat | nucleus | 38.81 | 41.01 |
TraesCS7A01G512700.1 | Wheat | mitochondrion | 43.88 | 40.5 |
TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 44.48 | 40.05 |
TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 43.88 | 39.95 |
TraesCS7D01G504300.3 | Wheat | mitochondrion | 43.88 | 39.73 |
TraesCS7B01G428200.1 | Wheat | mitochondrion | 43.28 | 39.73 |
TraesCS7A01G513400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.88 | 39.62 |
TraesCS7B01G430900.2 | Wheat | mitochondrion | 44.18 | 39.57 |
Zm00001d009879_P002 | Maize | plastid | 43.88 | 39.1 |
TraesCSU01G086900.1 | Wheat | mitochondrion | 42.39 | 38.27 |
GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 45.97 | 37.84 |
HORVU7Hr1G115000.1 | Barley | nucleus | 20.3 | 36.17 |
HORVU7Hr1G115100.2 | Barley | plastid | 42.69 | 35.05 |
Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 28.36 | 33.45 |
KXG21693 | Sorghum | plastid | 43.88 | 33.26 |
Bra039552.1-P | Field mustard | cytosol | 27.16 | 32.16 |
Os01t0551100-01 | Rice | cytosol | 24.18 | 31.64 |
Bra019456.1-P | Field mustard | nucleus | 28.06 | 6.5 |
Bra033293.1-P | Field mustard | cytosol, nucleus, plastid | 31.94 | 5.8 |
Bra031999.1-P | Field mustard | nucleus | 21.49 | 5.64 |
Bra002293.1-P | Field mustard | nucleus, plastid | 25.67 | 5.24 |
Protein Annotations
Gene3D:1.10.1520.10 | MapMan:12.5.1.12 | Gene3D:3.30.160.20 | EnsemblPlantsGene:Bra035784 | EnsemblPlants:Bra035784.1 | EnsemblPlants:Bra035784.1-P |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
GO:GO:0090501 | GO:GO:0090502 | InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 | UniProt:M4F3Y4 |
PFAM:PF00035 | PFAM:PF00636 | PFAM:PF14709 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 |
SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI0002547B01 | InterPro:dsRBD_dom | SEG:seg | : |
Description
AT3G20420 (E=5e-132) RTL2, ATRTL2 | RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III
Coordinates
chrA05:+:17181304..17182791
Molecular Weight (calculated)
37933.5 Da
IEP (calculated)
6.525
GRAVY (calculated)
-0.303
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MESLQAVEKI VNYSFANKSL LEEALTHTSC VDFPSYERLE FVGDSAVGLA LTNYLYLTYP NAEPHELSQL RAANVSTEKF ARVALKHGLY RFLRRNAPSL
101: DEKVTEFSEA VCKEDDSVYY GGLVKAPKVL ADLLESVAGA VYIDVNFDLQ RFWVIFRGLL EPIFTLDDLQ QQPQPISMLF QLCHKHNKRL AIRYLKEGKR
201: IIAGVYLDDQ LFASGSAENK DTAKLLAAKE ALGKFSECTP IAMVIDEGSV EVEVEDAKRK LYEICSKKKW PKPIYSVEEE RGSANEKRFV CSARIKIPSE
301: ESPLYMKGDE ESKKKKAENS SAYHMIIALR KSNYL
101: DEKVTEFSEA VCKEDDSVYY GGLVKAPKVL ADLLESVAGA VYIDVNFDLQ RFWVIFRGLL EPIFTLDDLQ QQPQPISMLF QLCHKHNKRL AIRYLKEGKR
201: IIAGVYLDDQ LFASGSAENK DTAKLLAAKE ALGKFSECTP IAMVIDEGSV EVEVEDAKRK LYEICSKKKW PKPIYSVEEE RGSANEKRFV CSARIKIPSE
301: ESPLYMKGDE ESKKKKAENS SAYHMIIALR KSNYL
001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L
Arabidopsis Description
RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.