Factsheet for Bra034322.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra019999.1-P
Bra020905.1-P
Bra030793.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Bra019999.1-P	AT1G09700.1	23141542
AT2G27100.1	Bra030793.1-P	AT1G09700.1	23141542
AT2G27100.1	Bra013546.1-P	AT4G21670.1	23141542
AT2G27100.1	Bra020905.1-P	AT4G21670.1	23141542
AT2G27100.1	Bra038764.1-P	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77068	Canola	nucleus	97.25	97.54
Bra012034.1-P	Field mustard	nucleus	85.55	83.38
AT2G27100.1	Thale cress	nucleus	80.92	77.78
GSMUA_Achr7P19610_001	Banana	nucleus	49.71	63.47
GSMUA_Achr6P01800_001	Banana	nucleus	48.7	62.29
VIT_06s0009g01570.t01	Wine grape	nucleus	65.17	61.36
Solyc01g009090.2.1	Tomato	nucleus	63.44	58.69
KRH56284	Soybean	endoplasmic reticulum	59.68	57.84
KRH62750	Soybean	nucleus	59.1	57.52
HORVU7Hr1G052570.1	Barley	nucleus	43.79	57.5
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	37.57	57.02
KRH44717	Soybean	nucleus	58.96	56.9
GSMUA_Achr10P...	Banana	nucleus	58.67	55.31
HORVU0Hr1G020790.1	Barley	nucleus	35.55	55.28
EES15338	Sorghum	nucleus	49.71	53.58
Zm00001d049767_P001	Maize	extracellular, nucleus	48.41	53.34
TraesCS7B01G323700.2	Wheat	nucleus	53.76	53.14
EER90312	Sorghum	nucleus	54.62	53.02
TraesCS7D01G416100.1	Wheat	nucleus	53.61	53.0
TraesCS7A01G423200.1	Wheat	nucleus	53.61	53.0
TraesCS6A01G119000.1	Wheat	nucleus	38.15	52.8
HORVU7Hr1G097860.2	Barley	plastid	52.46	52.38
Os08t0517300-01	Rice	plastid	48.84	52.24
TraesCS7B01G150500.1	Wheat	nucleus	48.12	51.79
TraesCS7A01G254300.1	Wheat	nucleus	47.98	51.63
TraesCS7D01G252800.1	Wheat	nucleus	47.83	51.48
Os06t0698859-01	Rice	nucleus	53.76	51.45
Zm00001d036495_P001	Maize	nucleus	53.61	51.38
HORVU6Hr1G021620.2	Barley	nucleus	39.6	51.22
Zm00001d014655_P001	Maize	nucleus, plastid	54.77	51.08
Zm00001d046965_P001	Maize	nucleus	20.09	50.0
Zm00001d047626_P001	Maize	cytosol	7.8	49.54
Zm00001d031542_P001	Maize	nucleus	47.11	48.8
Zm00001d006696_P001	Maize	nucleus	16.18	47.26
GSMUA_Achr5P22680_001	Banana	extracellular	12.86	46.11
Os02t0149600-01	Rice	nucleus	43.5	45.2
Zm00001d018785_P001	Maize	cytosol	17.05	42.91
Zm00001d046814_P001	Maize	cytosol	11.42	42.47
TraesCS6B01G147000.1	Wheat	nucleus	44.8	41.44
TraesCS6D01G108900.1	Wheat	nucleus	43.06	39.52
KXG29470	Sorghum	nucleus, plastid	42.63	36.33

Protein Annotations

EnsemblPlants:Bra034322.1	EnsemblPlants:Bra034322.1-P	EnsemblPlantsGene:Bra034322	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028	SEG:seg	UniParc:UPI0002543892	UniProt:M4EZS9
MapMan:15.5.15	MapMan:16.10.2.1.3	:	:	:	:

Description

AT2G27100 (E=2e-249) SE | SE (SERRATE); DNA binding / transcription factor

Coordinates

chrA04:-:11884931..11888139

Molecular Weight (calculated)

77576.4 Da

IEP (calculated)

7.305

GRAVY (calculated)

-1.165

Length

692 amino acids

Sequence
(BLAST)

001: MADVTLPPPD SVDIRPPENT TTSLPPPQQE HEPQEQQQPP QRDSRERRDD RDLERPPNRR DRSPLPPPPR RDYKRRPSGS PPPPYRDRRH SPPMRRSPPP
101: SKRYRRDDNG YDGRRGGGGG YGPPDRRFGY ENDREMGGRH GYGDERPPGR FTGRYQDWEG GRGGYGDASN RGSTQRDGLM SYKQFIQELE DDILPSEAER
201: RYQEYKSEYI TTQKRVYFNT HKEEEWLKDK YHPTNLLTVI EKRNEHARKL AKDFSLDLQS GNLDLGPAVT ALNKTSEPKS EDEAGGGGGG KRGKEIDFSA
301: APKAPSFTSD PKRILTDIEQ AQALVRKLDS EKGIVENVLS GSETEKSDKD KSHSGSTGPV IIIRGLTSVK GLEGVELLDT LITYLWRVHG VDYYGKVETS
401: EAKGLRHVRA EGKGSDAKGD EGEDKFDSHW QQRLKGQDPL EVMAAKEKLD AAAIEALDPH VRKIRDEKYG WKYGCGAKGC TKLFHAAEFV HKHLKLKHAE
501: LIVDMTVKVR EDLYFQNYMN DPNAPGGQPA TQQPGPRDRP MMRRKPSMES RLRDDRGGRR ERDRIDRSED QQRGDGNGPN GPNPEEGGYD AFGGQGGVHV
601: PSYSADMNAP PVLMPVPGAG PLGPFVPAPP EFAMQMFRDP SGPNPPLEGG GRGGPAPFLL SPAFRQDPRR LRSYQDLDAP EEEVTVIDYR SL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.