Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G150500.1 | Wheat | nucleus | 99.07 | 99.07 |
| TraesCS7A01G254300.1 | Wheat | nucleus | 98.91 | 98.91 |
| HORVU7Hr1G052570.1 | Barley | nucleus | 80.25 | 97.91 |
| HORVU0Hr1G020790.1 | Barley | nucleus | 67.19 | 97.08 |
| Os08t0517300-01 | Rice | plastid | 78.38 | 77.9 |
| EES15338 | Sorghum | nucleus | 76.21 | 76.32 |
| Zm00001d049767_P001 | Maize | extracellular, nucleus | 72.94 | 74.68 |
| Zm00001d046965_P001 | Maize | nucleus | 32.04 | 74.1 |
| Zm00001d031542_P001 | Maize | nucleus | 71.85 | 69.16 |
| Zm00001d006696_P001 | Maize | nucleus | 24.42 | 66.24 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 4.51 | 59.18 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 47.59 | 52.22 |
| TraesCS7D01G416100.1 | Wheat | nucleus | 55.68 | 51.14 |
| KRH56284 | Soybean | endoplasmic reticulum | 54.28 | 48.88 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 54.9 | 48.03 |
| KRH62750 | Soybean | nucleus | 53.03 | 47.96 |
| KRH44717 | Soybean | nucleus | 53.34 | 47.84 |
| Bra034322.1-P | Field mustard | nucleus | 51.48 | 47.83 |
| AT2G27100.1 | Thale cress | nucleus | 53.5 | 47.78 |
| CDX77068 | Canola | nucleus | 51.17 | 47.68 |
| Solyc01g009090.2.1 | Tomato | nucleus | 55.05 | 47.33 |
| CDX71472 | Canola | nucleus | 51.17 | 46.8 |
| Bra012034.1-P | Field mustard | nucleus | 50.86 | 46.06 |
| CDY04478 | Canola | nucleus | 50.86 | 46.06 |
| TraesCS6D01G108900.1 | Wheat | nucleus | 45.1 | 38.46 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G252800.1 | EnsemblPlantsGene:TraesCS7D01G252800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:Arsenite-R_2 |
| InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 | PFAM:PF04959 |
| PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | MapMan:15.5.15 | MapMan:16.10.2.1.3 | : |
Description
No Description!
Coordinates
chr7D:+:228507054..228516045
Molecular Weight (calculated)
70831.5 Da
IEP (calculated)
6.733
GRAVY (calculated)
-0.972
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVADAPRR AAPGASSSPP PPPSSAGGSG DRKRGRSSPV LPPPPPGPPP PAAQNKRHRT EGGGFDRRRL GGGQDDRRFG NDHGGQGRHN NRAPDWHDSG
101: RGGWNEGSGN SRREGLMSYK QFMQELEDDV SPVEAQSRYE EYKSEYITTQ KKAYFDLHKN DDWLRNKYHP TNLESVMERR NELARATANE FFQDLQSGNF
201: DTGPGLTSSA ANKSGNNDVN VNGKKGKLGK DPDDLYYSAP KAHPVSSEPR RISIDIEQAQ ALICKLDSEK GIENNVLSSS DDDKAGSGSH GSMGPIVIIR
301: GASTVKGLEG VELLDTLVTY LWRIHGVDYY GMSETNEPKG LRHVKADSRT YDGPSSNTAE WEEKLDSFWQ DRIQGQDPLE ILKAKDKIDA AASEVLDPHV
401: RKIRDEKYGW KYGCGAKGCT KLFHASEFVT KHLKLKHTDF VVELTSKVRE DIYFENYMND PKAPGGTPIM QQSAPREKGR QRPPIESRLR DERGRRFDRN
501: IDSSNPDGSS ENPDDPMYDS YGDPAVHGAF PPDVPAPPML MPVPGAGPLG PFIPAPPEVA MRMLREQGGP PPFEPNAGPR PRKAGRAGGP PMGGPSPILN
601: APLPIMHDPR MQDPRMQDPR KIRSYQDLDA PGDEVTVLDY RSL
101: RGGWNEGSGN SRREGLMSYK QFMQELEDDV SPVEAQSRYE EYKSEYITTQ KKAYFDLHKN DDWLRNKYHP TNLESVMERR NELARATANE FFQDLQSGNF
201: DTGPGLTSSA ANKSGNNDVN VNGKKGKLGK DPDDLYYSAP KAHPVSSEPR RISIDIEQAQ ALICKLDSEK GIENNVLSSS DDDKAGSGSH GSMGPIVIIR
301: GASTVKGLEG VELLDTLVTY LWRIHGVDYY GMSETNEPKG LRHVKADSRT YDGPSSNTAE WEEKLDSFWQ DRIQGQDPLE ILKAKDKIDA AASEVLDPHV
401: RKIRDEKYGW KYGCGAKGCT KLFHASEFVT KHLKLKHTDF VVELTSKVRE DIYFENYMND PKAPGGTPIM QQSAPREKGR QRPPIESRLR DERGRRFDRN
501: IDSSNPDGSS ENPDDPMYDS YGDPAVHGAF PPDVPAPPML MPVPGAGPLG PFIPAPPEVA MRMLREQGGP PPFEPNAGPR PRKAGRAGGP PMGGPSPILN
601: APLPIMHDPR MQDPRMQDPR KIRSYQDLDA PGDEVTVLDY RSL
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.