Factsheet for AT2G27100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012034.1-P	Field mustard	nucleus	80.56	81.69
CDX77068	Canola	nucleus	77.64	81.01
CDY04478	Canola	nucleus	79.86	80.99
Bra034322.1-P	Field mustard	nucleus	77.78	80.92
CDX71472	Canola	nucleus	78.47	80.37
VIT_06s0009g01570.t01	Wine grape	nucleus	67.22	65.85
GSMUA_Achr7P19610_001	Banana	nucleus	49.31	65.5
GSMUA_Achr6P01800_001	Banana	nucleus	48.33	64.33
Solyc01g009090.2.1	Tomato	nucleus	65.69	63.24
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	38.06	60.09
KRH56284	Soybean	endoplasmic reticulum	59.58	60.08
HORVU7Hr1G052570.1	Barley	nucleus	43.89	59.96
KRH44717	Soybean	nucleus	59.44	59.69
KRH62750	Soybean	nucleus	58.75	59.49
GSMUA_Achr10P...	Banana	nucleus	59.44	58.31
HORVU0Hr1G020790.1	Barley	nucleus	35.69	57.75
EER90312	Sorghum	nucleus	55.69	56.24
TraesCS7B01G323700.2	Wheat	nucleus	53.89	55.43
TraesCS7A01G423200.1	Wheat	nucleus	53.61	55.14
TraesCS7D01G416100.1	Wheat	nucleus	53.47	55.0
HORVU7Hr1G097860.2	Barley	plastid	52.64	54.69
EES15338	Sorghum	nucleus	48.47	54.36
Zm00001d049767_P001	Maize	extracellular, nucleus	47.36	54.3
TraesCS7B01G150500.1	Wheat	nucleus	48.19	53.97
Os08t0517300-01	Rice	plastid	48.47	53.94
TraesCS7A01G254300.1	Wheat	nucleus	48.06	53.81
TraesCS6A01G119000.1	Wheat	nucleus	37.36	53.8
Zm00001d036495_P001	Maize	nucleus	53.89	53.74
Os06t0698859-01	Rice	nucleus	53.75	53.53
TraesCS7D01G252800.1	Wheat	nucleus	47.78	53.5
Zm00001d014655_P001	Maize	nucleus, plastid	54.86	53.23
HORVU6Hr1G021620.2	Barley	nucleus	38.61	51.96
Zm00001d046965_P001	Maize	nucleus	20.0	51.8
Zm00001d031542_P001	Maize	nucleus	45.83	49.4
Zm00001d047626_P001	Maize	cytosol	7.36	48.62
Zm00001d006696_P001	Maize	nucleus	15.97	48.52
Os02t0149600-01	Rice	nucleus	43.06	46.55
GSMUA_Achr5P22680_001	Banana	extracellular	12.08	45.08
TraesCS6B01G147000.1	Wheat	nucleus	43.75	42.11
Zm00001d046814_P001	Maize	cytosol	10.83	41.94
Zm00001d018785_P001	Maize	cytosol	15.56	40.73
TraesCS6D01G108900.1	Wheat	nucleus	42.5	40.58
KXG29470	Sorghum	nucleus, plastid	42.64	37.81

Protein Annotations

MapMan:15.5.15	MapMan:16.10.2.1.3	PDB:3AX1	EntrezGene:817252	UniProt:A0A178VZD4	ProteinID:AAC77868.2
ProteinID:AEC07936.1	EMBL:AF311221	EMBL:AF428305	ArrayExpress:AT2G27100	EnsemblPlantsGene:AT2G27100	RefSeq:AT2G27100
TAIR:AT2G27100	RefSeq:AT2G27100-TAIR-G	EnsemblPlants:AT2G27100.1	TAIR:AT2G27100.1	EMBL:AY039915	EMBL:AY142569
EMBL:AY143937	InterPro:Arsenite-R_2	Unigene:At.25511	ncoils:Coil	InterPro:DUF3546	GO:GO:0000381
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730
GO:GO:0005737	GO:GO:0005829	GO:GO:0005846	GO:GO:0006139	GO:GO:0006355	GO:GO:0006397
GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010267	GO:GO:0010445	GO:GO:0016607
GO:GO:0019538	GO:GO:0031047	GO:GO:0031053	GO:GO:0040029	GO:GO:0046872	GO:GO:0048367
GO:GO:0048509	GO:GO:2000011	InterPro:IPR013087	RefSeq:NP_565635.1	ProteinID:OAP10615.1	PFAM:PF04959
PFAM:PF12066	PO:PO:0000005	PO:PO:0000013	PO:PO:0000014	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009049	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00028
PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	UniProt:Q9ZVD0	Symbol:SE	UniParc:UPI00000AC10E	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]

Coordinates

chr2:+:11572397..11576658

Molecular Weight (calculated)

81102.4 Da

IEP (calculated)

8.696

GRAVY (calculated)

-1.194

Length

720 amino acids

Sequence
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.