Factsheet for TraesCS7B01G150500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS4A01G180400.1
TraesCS4D01G132400.1
TraesCS5A01G149400.2
TraesCS5B01G148100.2
TraesCS5D01G143500.2
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	TraesCS4A01G180400.1	AT1G09700.1	23141542
AT2G27100.1	TraesCS4D01G132400.1	AT1G09700.1	23141542
AT2G27100.1	TraesCS5A01G149400.2	AT1G09700.1	23141542
AT2G27100.1	TraesCS5B01G148100.2	AT1G09700.1	23141542
AT2G27100.1	TraesCS5D01G143500.2	AT1G09700.1	23141542
AT2G27100.1	TraesCS2A01G373400.3	AT4G21670.1	23141542
AT2G27100.1	TraesCS2B01G390500.3	AT4G21670.1	23141542
AT2G27100.1	TraesCS2D01G369600.4	AT4G21670.1	23141542
AT2G27100.1	TraesCS6A01G235300.4	AT4G21670.1	23141542
AT2G27100.1	TraesCS6B01G264000.3	AT4G21670.1	23141542
AT2G27100.1	TraesCS6D01G218000.3	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G252800.1	Wheat	nucleus	99.07	99.07
TraesCS7A01G254300.1	Wheat	nucleus	99.07	99.07
HORVU7Hr1G052570.1	Barley	nucleus	80.4	98.1
HORVU0Hr1G020790.1	Barley	nucleus	67.19	97.08
Os08t0517300-01	Rice	plastid	78.38	77.9
EES15338	Sorghum	nucleus	76.98	77.1
Zm00001d049767_P001	Maize	extracellular, nucleus	73.56	75.32
Zm00001d046965_P001	Maize	nucleus	32.5	75.18
Zm00001d031542_P001	Maize	nucleus	72.78	70.06
Zm00001d006696_P001	Maize	nucleus	24.88	67.51
VIT_00s0220g00050.t01	Wine grape	cytosol	4.51	59.18
VIT_13s0047g00310.t01	Wine grape	nucleus	47.74	52.39
TraesCS7B01G323700.2	Wheat	nucleus	56.3	51.71
KRH56284	Soybean	endoplasmic reticulum	54.43	49.02
AT2G27100.1	Thale cress	nucleus	53.97	48.19
VIT_06s0009g01570.t01	Wine grape	nucleus	55.05	48.16
Bra034322.1-P	Field mustard	nucleus	51.79	48.12
KRH44717	Soybean	nucleus	53.65	48.12
KRH62750	Soybean	nucleus	53.19	48.1
CDX77068	Canola	nucleus	51.48	47.97
Solyc01g009090.2.1	Tomato	nucleus	55.21	47.46
CDX71472	Canola	nucleus	51.63	47.23
Bra012034.1-P	Field mustard	nucleus	51.17	46.34
CDY04478	Canola	nucleus	51.17	46.34
TraesCS6B01G147000.1	Wheat	nucleus	44.79	38.5

Protein Annotations

EnsemblPlants:TraesCS7B01G150500.1	EnsemblPlantsGene:TraesCS7B01G150500	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:Arsenite-R_2
InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	PFAM:PF04959
PFAM:PF12066	ScanProsite:PS00028	SEG:seg	MapMan:15.5.15	MapMan:16.10.2.1.3	:

Description

No Description!

Coordinates

chr7B:+:199751632..199761122

Molecular Weight (calculated)

70803.5 Da

IEP (calculated)

6.847

GRAVY (calculated)

-0.984

Length

643 amino acids

Sequence
(BLAST)

001: MAEVADAPRR AAPGASSSPP PPPSSAGGSG DRKRGRSSPV LPPPPPGPPP PAAQNKRHRT EGGGFDRRRL GGGQDDRRFG NDHGGQGRHN NRAPDWHDSG
101: RGGWNEGSGN SRREGLMSYK QFMQELEDDV SPVEAQSRYE EYKSEYITTQ KKAYFDLHKN EDWLRNKYHP TNLESVMERR NELARATANE FFQDLQSGNF
201: DTGPGLTSSA ANKSGNNDVN GNGKKGKLGK DPDDLYYSAP KAHPVSSEPR RISIDIEQAQ ALICKLDSEK GIENNVLSSS DDDKAGSGSH GSMGPIVIIR
301: GASTVKGLEG VELLDTLVTY LWRIHGVDYY GMSETNEPKG LRHVKADSRT YDGPSSNTAE WEEKLDSFWQ DRIQGQDPLE ILKAKDKIDA AASEVLDPHV
401: RKIRDEKYGW KYGCGAKGCT KLFHASEFVT KHLKLKHTDF VVELTSKVRE DIYFENYMND PKAPGGTPIM QQSAPREKGR QRPPIESRLR DERGRRFDRN
501: VDSSKPDGSS ENPDDPMYDS YGDPAVHGAF PPDIPAPPML MPVPGAGPLG PFIPAPPEVA MRMLREQGGP PPFEPNAGPR PRKAGRGGGP PMGGPSPILN
601: APLPIMHDPR MQDPRMQDPR KIRSYQDLDA PGDEVTVLDY RSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.