Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P21490_001 | Banana | nucleus | 26.77 | 18.32 |
| GSMUA_Achr2P22850_001 | Banana | cytosol | 18.22 | 15.86 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 20.82 | 12.64 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 19.7 | 11.75 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus, plastid | 20.45 | 11.7 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 15.61 | 11.67 |
| GSMUA_Achr11P... | Banana | nucleus | 15.99 | 11.5 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 20.45 | 9.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P01540_001 | EnsemblPlants:GSMUA_Achr7T01540_001 | EnsemblPlantsGene:GSMUA_Achr7G01540_001 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF114 |
| PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0002960C9C |
| UniProt:M0TDU4 | MapMan:35.2 | : | : | : | : |
Description
Putative double-stranded RNA binding motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G01540_001]
Coordinates
chr7:+:1219875..1223731
Molecular Weight (calculated)
28948.9 Da
IEP (calculated)
5.960
GRAVY (calculated)
-0.433
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLQELAQKR GLSLPKYTTT NYGESHMPTF SSKVEIKGEL FQGDVAKTKK QAENNAAKVA LSQLEECRAN RFSSNLVSKW QVNVESEPPT SSVEPIVNMN
101: SPKPSSLLIP ASQIDAKRTV DIIADHGATA SISNATPVSD QITNSTDEVM GIDGSYHHLT ISTDEPEITA KKKDTVAAVQ DPESADVMTN RETLRGAVSG
201: GGSSALSSNY NFHKFHPTTT SGKLPTGSTS SLLRNRVQVY PRKSDLVLPE GAVPLPCSDD SWVAVSLDF
101: SPKPSSLLIP ASQIDAKRTV DIIADHGATA SISNATPVSD QITNSTDEVM GIDGSYHHLT ISTDEPEITA KKKDTVAAVQ DPESADVMTN RETLRGAVSG
201: GGSSALSSNY NFHKFHPTTT SGKLPTGSTS SLLRNRVQVY PRKSDLVLPE GAVPLPCSDD SWVAVSLDF
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.