CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004642.1-P	Field mustard	cytosol, plastid	97.67	97.56
CDY23832	Canola	plastid	95.96	95.84
AT2G41720.1	Thale cress	cytosol, plastid	88.0	87.47
VIT_08s0007g08590.t01	Wine grape	cytosol	65.36	62.68
KRH66918	Soybean	cytosol	63.28	61.77
Solyc04g015950.1.1	Tomato	plastid	61.44	59.06
Os07t0213300-01	Rice	cytosol	47.61	57.46
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	54.96	53.58
KRG95241	Soybean	plastid	44.31	53.16
KXG36530	Sorghum	plastid	53.24	53.11
HORVU2Hr1G056820.1	Barley	plastid	53.12	52.99
TraesCS2B01G269700.1	Wheat	plastid	52.63	52.7
Zm00001d021871_P002	Maize	plastid	50.92	51.68
TraesCS2D01G244500.3	Wheat	plastid	52.75	51.43
TraesCS2A01G239500.2	Wheat	plastid	52.26	50.0
CDX71198	Canola	cytosol	14.57	21.02
CDY64953	Canola	cytosol	7.22	20.27
CDX74617	Canola	mitochondrion	8.69	20.23
CDY31603	Canola	plastid	16.4	20.21
CDY19091	Canola	cytosol	17.26	19.34
CDX71562	Canola	mitochondrion, plastid	16.52	19.31
CDY32056	Canola	plastid	18.97	19.16
CDY56509	Canola	plastid	18.85	18.83
CDY45398	Canola	plastid	19.83	18.75
CDY29249	Canola	plastid	18.73	18.73
CDY42639	Canola	plastid	11.02	18.63
CDY41990	Canola	plastid	10.65	18.47
CDX73117	Canola	plastid	19.46	18.42
CDY10802	Canola	plastid	19.09	18.37
CDY56616	Canola	plastid	17.38	18.0
CDY24692	Canola	plastid	10.16	17.29
CDY05264	Canola	plastid	10.28	17.14
CDY15384	Canola	cytosol	8.81	16.9
CDY31666	Canola	cytosol	12.61	16.53
CDX84260	Canola	cytosol, nucleus, plastid	12.97	16.49
CDY06027	Canola	plastid	10.53	16.2
CDX78150	Canola	plastid	9.55	16.08
CDX71917	Canola	plastid	10.65	15.96
CDX85360	Canola	plastid	9.55	15.45
CDX86283	Canola	plastid	9.55	15.35
CDX73576	Canola	plastid	9.3	15.23
CDX98345	Canola	cytosol	5.02	13.18
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX79920	EnsemblPlantsGene:GSBRNA2T00132776001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX79920	ProteinID:CDX79920.1
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE28AD	MapMan:35.1	:	:

Description

BnaA05g02360D

Coordinates

chrLK031819:+:850516..854527

Molecular Weight (calculated)

91782.9 Da

IEP (calculated)

8.933

GRAVY (calculated)

-0.209

Length

817 amino acids

Sequence
(BLAST)

001: MATVTHLVTP PESSRAYRPR AAAKTSEALQ EKKSVYVNYD RGEHEVSVRV SGFRKADIAR RYRVRVENDR FQKDWSVTEV AERLVALNRW EEVDGVLNSW
101: VGRFARKNFP ILISELSRRG CIDLCVNVFN WMKNQKNYCA RNDIYNTMIR LHARCNRVDQ ARGLFFEMQK WSCKPDAETY NALINAHGRA GQWRWAMNLM
201: DDMLRAAIAP SRTTYNNLIN ACGSSGNWRE ALEVCKKMTD NGVGPDLVTH NIVLSAYKSG RQYSKALSYF ELMKGAKVRP DTTTFNIIIY CLSKLGETSQ
301: ALDVFNSMRE KRAECRPDVV TFTSIMHLYS VRGEVENCRA VFEAMLAEGL RPNIVSYNAL MGAYAVHGMS ENALSVFQEI KRNGMVPDVV SYTCLLNSYG
401: RSGQPGKAKE VFLMMRKERR KPNVVTYNAL IDAYGSNGLL PEAVGVFRQM EQDGFKPNVV SVCTLLSACS RSGKKVNVET VLSAAEARGI KLNTAAYNSA
501: IGSLINGAEL EKAVALYQTM SRKNVKADSV TFTVLISGWC RMSKYSEAVS YLKDMEELGV PMTKEVYSSV LCAYSKQASG QVTEAESIFK QMKIDGCKPD
601: VIAYTSMLHA YNASEKWEKA CELFLEMEAN GVEPDSIACS ALMKAFNKGG QPSNVFILMD LMREKEVPFT GAVFFEIFSA CNTLQEWKRA IDLIQMMEPY
701: LPSLSIGLTN QMLHLFGKSG KVEAMMKLFY KIIASGVGIN LKTYSVLLEH LLAVGNWRKY IEVLEWMSDG GIQPSTQMYR DIISFGERSA GIEFEPVIRQ
801: KLASLRNKGG CDLSKAH

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.