CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019526.1-P	Field mustard	cytosol	44.13	71.21
CDY19091	Canola	cytosol	99.53	58.16
Os12t0562300-01	Rice	cytosol	39.67	55.23
CDY56616	Canola	plastid	79.34	42.84
CDY10802	Canola	plastid	83.8	42.05
AT2G31400.1	Thale cress	plastid	86.62	40.2
GSMUA_Achr2P02090_001	Banana	cytosol	55.87	36.62
PGSC0003DMT400018827	Potato	cytosol	64.55	36.38
VIT_07s0005g01660.t01	Wine grape	plastid	72.54	35.64
Solyc06g009520.2.1	Tomato	nucleus, plastid	64.32	32.58
KRH45156	Soybean	plastid	55.87	27.11
TraesCS5A01G085800.1	Wheat	plastid	54.23	26.92
TraesCS5B01G091600.1	Wheat	plastid	53.99	26.81
TraesCS5D01G097800.1	Wheat	plastid	53.52	26.64
KRH01436	Soybean	plastid	54.69	26.63
Zm00001d030624_P001	Maize	plastid	54.23	26.55
EES16159	Sorghum	plastid	53.29	26.03
CDX78150	Canola	plastid	15.02	13.2
CDX71198	Canola	cytosol	17.37	13.07
CDX73576	Canola	plastid	15.02	12.83
CDX85360	Canola	plastid	13.15	11.09
CDX86283	Canola	plastid	13.15	11.02
CDY31603	Canola	plastid	16.67	10.71
CDX73117	Canola	plastid	20.66	10.2
CDY45398	Canola	plastid	20.66	10.19
CDX71562	Canola	mitochondrion, plastid	16.67	10.16
CDY64953	Canola	cytosol	6.81	9.97
CDY41990	Canola	plastid	10.8	9.77
CDY42639	Canola	plastid	10.8	9.52
CDY05264	Canola	plastid	10.8	9.39
CDY24692	Canola	plastid	10.56	9.38
CDY06027	Canola	plastid	11.5	9.23
CDY23832	Canola	plastid	17.61	9.17
CDY32056	Canola	plastid	17.14	9.02
CDX98345	Canola	cytosol	6.57	9.0
CDX71917	Canola	plastid	11.5	8.99
CDX79920	Canola	cytosol, plastid	16.9	8.81
CDY56509	Canola	plastid	16.9	8.8
CDY29249	Canola	plastid	16.67	8.69
CDX74617	Canola	mitochondrion	6.81	8.26
CDY31666	Canola	cytosol	11.97	8.19
CDX84260	Canola	cytosol, nucleus, plastid	11.97	7.93
HORVU5Hr1G022350.1	Barley	plastid	8.69	7.2
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.1370.110	MapMan:35.1	UniProt:A0A078FR70	EnsemblPlants:CDY15384	ProteinID:CDY15384
ProteinID:CDY15384.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00085688001	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01713	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE8052	:

Description

BnaC04g42390DBnaC04g42390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR70]

Coordinates

chrLK032054:-:533494..535458

Molecular Weight (calculated)

46963.8 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.022

Length

426 amino acids

Sequence
(BLAST)

001: MASVGIKKDV VTYNALLGGY GKQRNYLEVK NVFAEMKRER VTPNLLTYST LIDVYSKGGL YKEAMEIFKE FKGAGLRADV VLYSALIDAL CKNGLVGSAV
101: SLIDEMTKEG VSPNVVTYNS IIDAFGRSAT VECLAESGDG GVMQIFGKLT IESSNRGKKD CKEGMHELSS ILEVIRKMHQ LEIKPNVVTF SAILNACSRC
201: NSFEDASVLL EELRLFDNQV YGVVHGLLKG HRENVWLQAQ SLFDKVNEMD GSTAAAFYNA LTDMLWHFGQ KRGAQLVALE GRSRQVWENV WSESCLDLHL
301: MSSGAARAMV HAWLLNIRSI VYEGHELPKL LSILTGWGKH SKVVGDAALR PAVEALLRGI DAPFYLSKCN MGRFTSSGSV VATWLRESAT LKLLIVHDHV
401: TTKASTTRGP AEQHEQTSLT LQPLLL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.