CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035290.1-P	Field mustard	plastid	98.94	70.0
CDY32056	Canola	plastid	98.94	69.22
GSMUA_Achr6P16830_001	Banana	cytosol	68.37	68.86
AT5G02860.2	Thale cress	plastid	93.99	64.96
KRH27571	Soybean	plastid	61.31	64.26
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	45.58	55.48
VIT_03s0091g00440.t01	Wine grape	plastid	77.92	54.38
Solyc01g107320.2.1	Tomato	plastid	74.38	51.4
HORVU2Hr1G035060.2	Barley	cytosol	56.71	51.36
PGSC0003DMT400066525	Potato	plastid	74.03	50.91
KRG91073	Soybean	plastid	69.43	49.5
KXG36606	Sorghum	plastid	58.13	42.56
Os07t0590600-00	Rice	plastid	58.48	42.22
Zm00001d022003_P001	Maize	plastid	57.6	41.01
TraesCS2D01G193100.1	Wheat	plastid	56.71	40.48
TraesCS2B01G212000.1	Wheat	plastid	56.36	40.13
CDY29249	Canola	plastid	41.7	28.89
CDY56509	Canola	plastid	41.7	28.85
CDY64953	Canola	cytosol	10.78	20.96
CDX85360	Canola	plastid	17.67	19.8
CDY24692	Canola	plastid	16.61	19.58
CDX86283	Canola	plastid	17.49	19.49
CDY05264	Canola	plastid	16.78	19.39
CDY06027	Canola	plastid	18.02	19.21
CDX78150	Canola	plastid	16.25	18.97
CDX71917	Canola	plastid	17.67	18.35
CDX73576	Canola	plastid	16.08	18.24
CDY31666	Canola	cytosol	19.79	17.98
CDY31603	Canola	plastid	21.02	17.95
CDX84260	Canola	cytosol, nucleus, plastid	19.96	17.57
CDY15384	Canola	cytosol	13.07	17.37
CDX98345	Canola	cytosol	9.54	17.36
CDX74617	Canola	mitochondrion	10.6	17.09
CDX71562	Canola	mitochondrion, plastid	21.02	17.02
CDY41990	Canola	plastid	14.13	16.99
CDY42639	Canola	plastid	14.31	16.77
CDY19091	Canola	cytosol	21.55	16.74
CDX73117	Canola	plastid	23.5	15.41
CDY45398	Canola	plastid	23.5	15.39
CDY10802	Canola	plastid	21.91	14.61
CDX79920	Canola	cytosol, plastid	21.02	14.57
CDY23832	Canola	plastid	21.02	14.55
CDY56616	Canola	plastid	19.43	13.94
CDY52317	Canola	cytosol	0.18	5.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	EnsemblPlants:CDX71198	ProteinID:CDX71198	ProteinID:CDX71198.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00144741001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF308
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EECB90	:

Description

BnaC07g04770D

Coordinates

chrLK031792:-:816627..818725

Molecular Weight (calculated)

64024.6 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.268

Length

566 amino acids

Sequence
(BLAST)

001: MGTPWSKIMS LVEKMKSYGI APDAYTYNTL ITCCKRGSLH EEAARVFQEM KMAGFSHDKV TYNALLDVYG KSHRPKEAMK VLNEMELSGF TPSIVTYNSL
101: ISAYARDGML DEAMELKNQM VGKGMKPDVF TYTTLLSGFE RAGKVESAMS VFEEMRTAGC KPNICTFNAF IKMYGNRGRF AEMMKIFDEI NVCGLSPDIV
201: TWNTLLAVFG QNGMDSEVSG VFKEMKRAGF VPERETFNTL ISAYSRCGSF EQAMTVYRRM LKAGVTPDLS TYNTVLAALA RGGMWEQSEK VLAEMEDGRC
301: KPNELTYCSL LHAYANGKEI GRMHFLAEEV YSGVIEPRAV LLKTLVLVCS KCDLLPEAER AFSELKERGF SPDITTLNSM VSIYGRRQMV AKANKVLDYM
401: KEMGFTPSMA TYNSLMYMHS RSADFGKSEE ILREIQAKGI KPDIISYNTV IYAYCRNTRM RDASRIFAEM RDSGIVPDVI TYNTFIGSYA ADSMFEEAIG
501: VVRYMIKNGC RPNQNTYNSI VDGYCKLNRK DEAKLFAEDL KNLDPHAPKD EEQRLLERIV KKWPIR

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.